Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 34124 | 0.66 | 0.674604 |
|
Target: 5'- gCGGguUGGGCG-GGCUGCGcGggcgCGGGCg -3' miRNA: 3'- aGUC--ACUCGCaUUGACGC-Ca---GCCCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 13227 | 0.67 | 0.642037 |
|
Target: 5'- gCAGcGGGCucgGGCUGCGGUugaaCGGGUg -3' miRNA: 3'- aGUCaCUCGca-UUGACGCCA----GCCCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 10051 | 0.67 | 0.63115 |
|
Target: 5'- gCAGaGAGCuGUAGC-GCGGUCGuauGGCg -3' miRNA: 3'- aGUCaCUCG-CAUUGaCGCCAGC---CCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 13041 | 0.67 | 0.620264 |
|
Target: 5'- gCGGUGcGCGUcgAGCUGCGGcCGauuguGGCUu -3' miRNA: 3'- aGUCACuCGCA--UUGACGCCaGC-----CCGA- -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 57278 | 0.68 | 0.609388 |
|
Target: 5'- ----cGAGCGUGACgGCgaGGUCGGcGCg -3' miRNA: 3'- agucaCUCGCAUUGaCG--CCAGCC-CGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 37720 | 0.68 | 0.598532 |
|
Target: 5'- gCAGaugGGGCGUGaaggGCUGCGcGUCgaagGGGCa -3' miRNA: 3'- aGUCa--CUCGCAU----UGACGC-CAG----CCCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 11133 | 0.68 | 0.598532 |
|
Target: 5'- cCGGacuucUGGGCGUGGCUcCGGUcgcaCGGGCg -3' miRNA: 3'- aGUC-----ACUCGCAUUGAcGCCA----GCCCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 13790 | 0.71 | 0.412891 |
|
Target: 5'- uUCGGUGGGCGccGGCgcggcuucaucgGCGGgagCGGGCg -3' miRNA: 3'- -AGUCACUCGCa-UUGa-----------CGCCa--GCCCGa -5' |
|||||||
| 23931 | 5' | -56 | NC_005262.1 | + | 27014 | 1.08 | 0.001205 |
|
Target: 5'- aUCAGUGAGCGUAACUGCGGUCGGGCUc -3' miRNA: 3'- -AGUCACUCGCAUUGACGCCAGCCCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home