miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 3' -58.9 NC_005262.1 + 35069 0.69 0.43323
Target:  5'- cGGCGUccgGGCG-CGCGG-CCu--CGCGg -3'
miRNA:   3'- -CCGCAa--CCGCaGCGCCaGGuacGCGC- -5'
23932 3' -58.9 NC_005262.1 + 14098 0.69 0.415029
Target:  5'- cGGCac-GcCGUCGCGGUUCAgguUGCGCGc -3'
miRNA:   3'- -CCGcaaCcGCAGCGCCAGGU---ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 12428 0.69 0.415029
Target:  5'- uGGCc--GGCGUCGCGGaCg--GCGCGg -3'
miRNA:   3'- -CCGcaaCCGCAGCGCCaGguaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 40251 0.69 0.406106
Target:  5'- gGGCgGUUGGUcagucugCGCGGUCCucccGCGCu -3'
miRNA:   3'- -CCG-CAACCGca-----GCGCCAGGua--CGCGc -5'
23932 3' -58.9 NC_005262.1 + 38560 0.69 0.415029
Target:  5'- cGGCGUUG-CG-CGCGGUUCggGCGg- -3'
miRNA:   3'- -CCGCAACcGCaGCGCCAGGuaCGCgc -5'
23932 3' -58.9 NC_005262.1 + 10780 0.69 0.397304
Target:  5'- cGCGccgGGCG-CGCGGUaCUGcUGCGCGa -3'
miRNA:   3'- cCGCaa-CCGCaGCGCCA-GGU-ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 24093 0.69 0.424071
Target:  5'- ------aGCGUCGCGGUCgAUGCgGCGg -3'
miRNA:   3'- ccgcaacCGCAGCGCCAGgUACG-CGC- -5'
23932 3' -58.9 NC_005262.1 + 52759 0.7 0.339238
Target:  5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3'
miRNA:   3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 46905 0.7 0.363351
Target:  5'- gGGCGgugcGGUGUggUGCGG-CCcgGCGCGc -3'
miRNA:   3'- -CCGCaa--CCGCA--GCGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 32037 0.7 0.371648
Target:  5'- uGCGgcGGaUGUUGUGGaCCGUGCGCu -3'
miRNA:   3'- cCGCaaCC-GCAGCGCCaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 50579 0.7 0.371648
Target:  5'- aGCGUUGGCGgacgCGcCGGU---UGCGCGc -3'
miRNA:   3'- cCGCAACCGCa---GC-GCCAgguACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 12594 0.7 0.339238
Target:  5'- cGGCGa-GGCGUCGCGGaUgA-GCGCGc -3'
miRNA:   3'- -CCGCaaCCGCAGCGCCaGgUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 35839 0.73 0.236359
Target:  5'- cGGCGUcGGCGcCGCGaccgcccagauGUuuGUGCGCGg -3'
miRNA:   3'- -CCGCAaCCGCaGCGC-----------CAggUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 49221 0.73 0.242318
Target:  5'- gGGCGgccucGGCGgcgCGCaGUCCGcGCGCGa -3'
miRNA:   3'- -CCGCaa---CCGCa--GCGcCAGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 5181 0.74 0.219216
Target:  5'- cGGCGUcgcgGGCGcgggCGCGG-CCG-GCGCGa -3'
miRNA:   3'- -CCGCAa---CCGCa---GCGCCaGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 41568 0.74 0.193008
Target:  5'- cGGCGUgGGCGgCGCGG-CCGUgagcuugucgaGCGCGa -3'
miRNA:   3'- -CCGCAaCCGCaGCGCCaGGUA-----------CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 37866 0.74 0.219216
Target:  5'- cGGaaaaGUcGGCGUCGCGcGUggcgacguaCCAUGCGCGc -3'
miRNA:   3'- -CCg---CAaCCGCAGCGC-CA---------GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 25529 0.74 0.219216
Target:  5'- aGCauccGCGUCGCGacGUCCGUGCGCGg -3'
miRNA:   3'- cCGcaacCGCAGCGC--CAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17291 0.75 0.183317
Target:  5'- gGGCaggGGCGUCGCGGUCgGaGUGCu -3'
miRNA:   3'- -CCGcaaCCGCAGCGCCAGgUaCGCGc -5'
23932 3' -58.9 NC_005262.1 + 17222 0.83 0.052792
Target:  5'- cGGCGcUGGCGUCGUGGUCguCGUGgGCGu -3'
miRNA:   3'- -CCGCaACCGCAGCGCCAG--GUACgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.