miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 3' -58.9 NC_005262.1 + 25855 1.09 0.000587
Target:  5'- gGGCGUUGGCGUCGCGGUCCAUGCGCGc -3'
miRNA:   3'- -CCGCAACCGCAGCGCCAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 29153 0.66 0.613559
Target:  5'- aGGCcgagUGGCG-CGCGa-CCAUGCGUc -3'
miRNA:   3'- -CCGca--ACCGCaGCGCcaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 32037 0.7 0.371648
Target:  5'- uGCGgcGGaUGUUGUGGaCCGUGCGCu -3'
miRNA:   3'- cCGCaaCC-GCAGCGCCaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 35069 0.69 0.43323
Target:  5'- cGGCGUccgGGCG-CGCGG-CCu--CGCGg -3'
miRNA:   3'- -CCGCAa--CCGCaGCGCCaGGuacGCGC- -5'
23932 3' -58.9 NC_005262.1 + 35839 0.73 0.236359
Target:  5'- cGGCGUcGGCGcCGCGaccgcccagauGUuuGUGCGCGg -3'
miRNA:   3'- -CCGCAaCCGCaGCGC-----------CAggUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 37866 0.74 0.219216
Target:  5'- cGGaaaaGUcGGCGUCGCGcGUggcgacguaCCAUGCGCGc -3'
miRNA:   3'- -CCg---CAaCCGCAGCGC-CA---------GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 38560 0.69 0.415029
Target:  5'- cGGCGUUG-CG-CGCGGUUCggGCGg- -3'
miRNA:   3'- -CCGCAACcGCaGCGCCAGGuaCGCgc -5'
23932 3' -58.9 NC_005262.1 + 38851 0.68 0.480671
Target:  5'- aGCug-GGCGcgccgCGCGG-CCAUGUGCGc -3'
miRNA:   3'- cCGcaaCCGCa----GCGCCaGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 39583 0.68 0.480671
Target:  5'- cGGCGUgccggcgcaGCGUCGCGGcugCCGccucggGCGUGa -3'
miRNA:   3'- -CCGCAac-------CGCAGCGCCa--GGUa-----CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 40251 0.69 0.406106
Target:  5'- gGGCgGUUGGUcagucugCGCGGUCCucccGCGCu -3'
miRNA:   3'- -CCG-CAACCGca-----GCGCCAGGua--CGCGc -5'
23932 3' -58.9 NC_005262.1 + 41568 0.74 0.193008
Target:  5'- cGGCGUgGGCGgCGCGG-CCGUgagcuugucgaGCGCGa -3'
miRNA:   3'- -CCGCAaCCGCaGCGCCaGGUA-----------CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 46720 0.67 0.530503
Target:  5'- cGCGUcgacgGGCG-CGCcuaucGGcgCCGUGCGCGc -3'
miRNA:   3'- cCGCAa----CCGCaGCG-----CCa-GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 46905 0.7 0.363351
Target:  5'- gGGCGgugcGGUGUggUGCGG-CCcgGCGCGc -3'
miRNA:   3'- -CCGCaa--CCGCA--GCGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 49221 0.73 0.242318
Target:  5'- gGGCGgccucGGCGgcgCGCaGUCCGcGCGCGa -3'
miRNA:   3'- -CCGCaa---CCGCa--GCGcCAGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 50579 0.7 0.371648
Target:  5'- aGCGUUGGCGgacgCGcCGGU---UGCGCGc -3'
miRNA:   3'- cCGCAACCGCa---GC-GCCAgguACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52309 0.68 0.470975
Target:  5'- aGCuc-GGCGaCGCGGcCCAUGUGCu -3'
miRNA:   3'- cCGcaaCCGCaGCGCCaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 52368 0.67 0.55097
Target:  5'- cGGCGUgucGCGcaccuUCgGCGG-CCcgGCGCGg -3'
miRNA:   3'- -CCGCAac-CGC-----AG-CGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52759 0.7 0.339238
Target:  5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3'
miRNA:   3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 56354 0.68 0.490464
Target:  5'- cGGCGUgccccGCGagcagaUCGC-GUUCAUGCGCGa -3'
miRNA:   3'- -CCGCAac---CGC------AGCGcCAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 60127 0.67 0.520373
Target:  5'- gGGCGccaGCGUCGCGGcgaaggCAUGgGCGa -3'
miRNA:   3'- -CCGCaacCGCAGCGCCag----GUACgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.