Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23932 | 3' | -58.9 | NC_005262.1 | + | 60406 | 0.66 | 0.571671 |
Target: 5'- cGGCGgcaUGGCGcaCGUGGUCgAgauCGCGa -3' miRNA: 3'- -CCGCa--ACCGCa-GCGCCAGgUac-GCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 60127 | 0.67 | 0.520373 |
Target: 5'- gGGCGccaGCGUCGCGGcgaaggCAUGgGCGa -3' miRNA: 3'- -CCGCaacCGCAGCGCCag----GUACgCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 56354 | 0.68 | 0.490464 |
Target: 5'- cGGCGUgccccGCGagcagaUCGC-GUUCAUGCGCGa -3' miRNA: 3'- -CCGCAac---CGC------AGCGcCAGGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52759 | 0.7 | 0.339238 |
Target: 5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3' miRNA: 3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52368 | 0.67 | 0.55097 |
Target: 5'- cGGCGUgucGCGcaccuUCgGCGG-CCcgGCGCGg -3' miRNA: 3'- -CCGCAac-CGC-----AG-CGCCaGGuaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52309 | 0.68 | 0.470975 |
Target: 5'- aGCuc-GGCGaCGCGGcCCAUGUGCu -3' miRNA: 3'- cCGcaaCCGCaGCGCCaGGUACGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 50579 | 0.7 | 0.371648 |
Target: 5'- aGCGUUGGCGgacgCGcCGGU---UGCGCGc -3' miRNA: 3'- cCGCAACCGCa---GC-GCCAgguACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 49221 | 0.73 | 0.242318 |
Target: 5'- gGGCGgccucGGCGgcgCGCaGUCCGcGCGCGa -3' miRNA: 3'- -CCGCaa---CCGCa--GCGcCAGGUaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 46905 | 0.7 | 0.363351 |
Target: 5'- gGGCGgugcGGUGUggUGCGG-CCcgGCGCGc -3' miRNA: 3'- -CCGCaa--CCGCA--GCGCCaGGuaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 46720 | 0.67 | 0.530503 |
Target: 5'- cGCGUcgacgGGCG-CGCcuaucGGcgCCGUGCGCGc -3' miRNA: 3'- cCGCAa----CCGCaGCG-----CCa-GGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 41568 | 0.74 | 0.193008 |
Target: 5'- cGGCGUgGGCGgCGCGG-CCGUgagcuugucgaGCGCGa -3' miRNA: 3'- -CCGCAaCCGCaGCGCCaGGUA-----------CGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 40251 | 0.69 | 0.406106 |
Target: 5'- gGGCgGUUGGUcagucugCGCGGUCCucccGCGCu -3' miRNA: 3'- -CCG-CAACCGca-----GCGCCAGGua--CGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 39583 | 0.68 | 0.480671 |
Target: 5'- cGGCGUgccggcgcaGCGUCGCGGcugCCGccucggGCGUGa -3' miRNA: 3'- -CCGCAac-------CGCAGCGCCa--GGUa-----CGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 38851 | 0.68 | 0.480671 |
Target: 5'- aGCug-GGCGcgccgCGCGG-CCAUGUGCGc -3' miRNA: 3'- cCGcaaCCGCa----GCGCCaGGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 38560 | 0.69 | 0.415029 |
Target: 5'- cGGCGUUG-CG-CGCGGUUCggGCGg- -3' miRNA: 3'- -CCGCAACcGCaGCGCCAGGuaCGCgc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 37866 | 0.74 | 0.219216 |
Target: 5'- cGGaaaaGUcGGCGUCGCGcGUggcgacguaCCAUGCGCGc -3' miRNA: 3'- -CCg---CAaCCGCAGCGC-CA---------GGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 35839 | 0.73 | 0.236359 |
Target: 5'- cGGCGUcGGCGcCGCGaccgcccagauGUuuGUGCGCGg -3' miRNA: 3'- -CCGCAaCCGCaGCGC-----------CAggUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 35069 | 0.69 | 0.43323 |
Target: 5'- cGGCGUccgGGCG-CGCGG-CCu--CGCGg -3' miRNA: 3'- -CCGCAa--CCGCaGCGCCaGGuacGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 32037 | 0.7 | 0.371648 |
Target: 5'- uGCGgcGGaUGUUGUGGaCCGUGCGCu -3' miRNA: 3'- cCGCaaCC-GCAGCGCCaGGUACGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 29153 | 0.66 | 0.613559 |
Target: 5'- aGGCcgagUGGCG-CGCGa-CCAUGCGUc -3' miRNA: 3'- -CCGca--ACCGCaGCGCcaGGUACGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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