miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 3' -58.9 NC_005262.1 + 25855 1.09 0.000587
Target:  5'- gGGCGUUGGCGUCGCGGUCCAUGCGCGc -3'
miRNA:   3'- -CCGCAACCGCAGCGCCAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 25529 0.74 0.219216
Target:  5'- aGCauccGCGUCGCGacGUCCGUGCGCGg -3'
miRNA:   3'- cCGcaacCGCAGCGC--CAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 24093 0.69 0.424071
Target:  5'- ------aGCGUCGCGGUCgAUGCgGCGg -3'
miRNA:   3'- ccgcaacCGCAGCGCCAGgUACG-CGC- -5'
23932 3' -58.9 NC_005262.1 + 22891 0.68 0.442503
Target:  5'- cGGCGagGGCGUaguacgGUGGUCgguucuCGUGUGCGg -3'
miRNA:   3'- -CCGCaaCCGCAg-----CGCCAG------GUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 22659 0.68 0.451887
Target:  5'- aGGCGgaaUGGCuucagggCGCGGaCCAgUGCGCa -3'
miRNA:   3'- -CCGCa--ACCGca-----GCGCCaGGU-ACGCGc -5'
23932 3' -58.9 NC_005262.1 + 21805 0.66 0.592554
Target:  5'- gGGCGUU--CGUCGC-GUUC-UGCGCGg -3'
miRNA:   3'- -CCGCAAccGCAGCGcCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 18793 0.66 0.571671
Target:  5'- cGUGUUGGCGUcCGCcG-CCugccGCGCGg -3'
miRNA:   3'- cCGCAACCGCA-GCGcCaGGua--CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 18719 0.67 0.534575
Target:  5'- aGGCGUcaaGGCGcuccucagcuucggCGCGG-CUcgGCGCGu -3'
miRNA:   3'- -CCGCAa--CCGCa-------------GCGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17327 0.67 0.55097
Target:  5'- gGGCu---GCGUCGUGG-CCG-GCGCGg -3'
miRNA:   3'- -CCGcaacCGCAGCGCCaGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17291 0.75 0.183317
Target:  5'- gGGCaggGGCGUCGCGGUCgGaGUGCu -3'
miRNA:   3'- -CCGcaaCCGCAGCGCCAGgUaCGCGc -5'
23932 3' -58.9 NC_005262.1 + 17222 0.83 0.052792
Target:  5'- cGGCGcUGGCGUCGUGGUCguCGUGgGCGu -3'
miRNA:   3'- -CCGCaACCGCAGCGCCAG--GUACgCGC- -5'
23932 3' -58.9 NC_005262.1 + 17128 0.66 0.571671
Target:  5'- cGGCG--GGCGUCGgugcCGGcgCCAUGCuGCc -3'
miRNA:   3'- -CCGCaaCCGCAGC----GCCa-GGUACG-CGc -5'
23932 3' -58.9 NC_005262.1 + 14098 0.69 0.415029
Target:  5'- cGGCac-GcCGUCGCGGUUCAgguUGCGCGc -3'
miRNA:   3'- -CCGcaaCcGCAGCGCCAGGU---ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 12594 0.7 0.339238
Target:  5'- cGGCGa-GGCGUCGCGGaUgA-GCGCGc -3'
miRNA:   3'- -CCGCaaCCGCAGCGCCaGgUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 12428 0.69 0.415029
Target:  5'- uGGCc--GGCGUCGCGGaCg--GCGCGg -3'
miRNA:   3'- -CCGcaaCCGCAGCGCCaGguaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 10780 0.69 0.397304
Target:  5'- cGCGccgGGCG-CGCGGUaCUGcUGCGCGa -3'
miRNA:   3'- cCGCaa-CCGCaGCGCCA-GGU-ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 10772 0.67 0.500348
Target:  5'- cGUGUacUGGCugGUCGCGG-CCAUGCuGuCGg -3'
miRNA:   3'- cCGCA--ACCG--CAGCGCCaGGUACG-C-GC- -5'
23932 3' -58.9 NC_005262.1 + 7017 0.66 0.603045
Target:  5'- cGGCGgcuucggUGGaCGUCa-GGUCCuucGCGCGc -3'
miRNA:   3'- -CCGCa------ACC-GCAGcgCCAGGua-CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 5607 0.67 0.524416
Target:  5'- cGCGgcGGCGUCGauGUUCGcgaccucgcccgaguUGCGCa -3'
miRNA:   3'- cCGCaaCCGCAGCgcCAGGU---------------ACGCGc -5'
23932 3' -58.9 NC_005262.1 + 5181 0.74 0.219216
Target:  5'- cGGCGUcgcgGGCGcgggCGCGG-CCG-GCGCGa -3'
miRNA:   3'- -CCGCAa---CCGCa---GCGCCaGGUaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.