miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 3' -58.9 NC_005262.1 + 46905 0.7 0.363351
Target:  5'- gGGCGgugcGGUGUggUGCGG-CCcgGCGCGc -3'
miRNA:   3'- -CCGCaa--CCGCA--GCGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52759 0.7 0.339238
Target:  5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3'
miRNA:   3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 37866 0.74 0.219216
Target:  5'- cGGaaaaGUcGGCGUCGCGcGUggcgacguaCCAUGCGCGc -3'
miRNA:   3'- -CCg---CAaCCGCAGCGC-CA---------GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17291 0.75 0.183317
Target:  5'- gGGCaggGGCGUCGCGGUCgGaGUGCu -3'
miRNA:   3'- -CCGcaaCCGCAGCGCCAGgUaCGCGc -5'
23932 3' -58.9 NC_005262.1 + 41568 0.74 0.193008
Target:  5'- cGGCGUgGGCGgCGCGG-CCGUgagcuugucgaGCGCGa -3'
miRNA:   3'- -CCGCAaCCGCaGCGCCaGGUA-----------CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17222 0.83 0.052792
Target:  5'- cGGCGcUGGCGUCGUGGUCguCGUGgGCGu -3'
miRNA:   3'- -CCGCaACCGCAGCGCCAG--GUACgCGC- -5'
23932 3' -58.9 NC_005262.1 + 25855 1.09 0.000587
Target:  5'- gGGCGUUGGCGUCGCGGUCCAUGCGCGc -3'
miRNA:   3'- -CCGCAACCGCAGCGCCAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 14098 0.69 0.415029
Target:  5'- cGGCac-GcCGUCGCGGUUCAgguUGCGCGc -3'
miRNA:   3'- -CCGcaaCcGCAGCGCCAGGU---ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 38560 0.69 0.415029
Target:  5'- cGGCGUUG-CG-CGCGGUUCggGCGg- -3'
miRNA:   3'- -CCGCAACcGCaGCGCCAGGuaCGCgc -5'
23932 3' -58.9 NC_005262.1 + 35069 0.69 0.43323
Target:  5'- cGGCGUccgGGCG-CGCGG-CCu--CGCGg -3'
miRNA:   3'- -CCGCAa--CCGCaGCGCCaGGuacGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17128 0.66 0.571671
Target:  5'- cGGCG--GGCGUCGgugcCGGcgCCAUGCuGCc -3'
miRNA:   3'- -CCGCaaCCGCAGC----GCCa-GGUACG-CGc -5'
23932 3' -58.9 NC_005262.1 + 18793 0.66 0.571671
Target:  5'- cGUGUUGGCGUcCGCcG-CCugccGCGCGg -3'
miRNA:   3'- cCGCAACCGCA-GCGcCaGGua--CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52368 0.67 0.55097
Target:  5'- cGGCGUgucGCGcaccuUCgGCGG-CCcgGCGCGg -3'
miRNA:   3'- -CCGCAac-CGC-----AG-CGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17327 0.67 0.55097
Target:  5'- gGGCu---GCGUCGUGG-CCG-GCGCGg -3'
miRNA:   3'- -CCGcaacCGCAGCGCCaGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 46720 0.67 0.530503
Target:  5'- cGCGUcgacgGGCG-CGCcuaucGGcgCCGUGCGCGc -3'
miRNA:   3'- cCGCAa----CCGCaGCG-----CCa-GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 10772 0.67 0.500348
Target:  5'- cGUGUacUGGCugGUCGCGG-CCAUGCuGuCGg -3'
miRNA:   3'- cCGCA--ACCG--CAGCGCCaGGUACG-C-GC- -5'
23932 3' -58.9 NC_005262.1 + 39583 0.68 0.480671
Target:  5'- cGGCGUgccggcgcaGCGUCGCGGcugCCGccucggGCGUGa -3'
miRNA:   3'- -CCGCAac-------CGCAGCGCCa--GGUa-----CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 38851 0.68 0.480671
Target:  5'- aGCug-GGCGcgccgCGCGG-CCAUGUGCGc -3'
miRNA:   3'- cCGcaaCCGCa----GCGCCaGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52309 0.68 0.470975
Target:  5'- aGCuc-GGCGaCGCGGcCCAUGUGCu -3'
miRNA:   3'- cCGcaaCCGCaGCGCCaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 22891 0.68 0.442503
Target:  5'- cGGCGagGGCGUaguacgGUGGUCgguucuCGUGUGCGg -3'
miRNA:   3'- -CCGCaaCCGCAg-----CGCCAG------GUACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.