Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23932 | 3' | -58.9 | NC_005262.1 | + | 46720 | 0.67 | 0.530503 |
Target: 5'- cGCGUcgacgGGCG-CGCcuaucGGcgCCGUGCGCGc -3' miRNA: 3'- cCGCAa----CCGCaGCG-----CCa-GGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 32037 | 0.7 | 0.371648 |
Target: 5'- uGCGgcGGaUGUUGUGGaCCGUGCGCu -3' miRNA: 3'- cCGCaaCC-GCAGCGCCaGGUACGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52759 | 0.7 | 0.339238 |
Target: 5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3' miRNA: 3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 25855 | 1.09 | 0.000587 |
Target: 5'- gGGCGUUGGCGUCGCGGUCCAUGCGCGc -3' miRNA: 3'- -CCGCAACCGCAGCGCCAGGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52309 | 0.68 | 0.470975 |
Target: 5'- aGCuc-GGCGaCGCGGcCCAUGUGCu -3' miRNA: 3'- cCGcaaCCGCaGCGCCaGGUACGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 21805 | 0.66 | 0.592554 |
Target: 5'- gGGCGUU--CGUCGC-GUUC-UGCGCGg -3' miRNA: 3'- -CCGCAAccGCAGCGcCAGGuACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 17128 | 0.66 | 0.571671 |
Target: 5'- cGGCG--GGCGUCGgugcCGGcgCCAUGCuGCc -3' miRNA: 3'- -CCGCaaCCGCAGC----GCCa-GGUACG-CGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 18793 | 0.66 | 0.571671 |
Target: 5'- cGUGUUGGCGUcCGCcG-CCugccGCGCGg -3' miRNA: 3'- cCGCAACCGCA-GCGcCaGGua--CGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 52368 | 0.67 | 0.55097 |
Target: 5'- cGGCGUgucGCGcaccuUCgGCGG-CCcgGCGCGg -3' miRNA: 3'- -CCGCAac-CGC-----AG-CGCCaGGuaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 50579 | 0.7 | 0.371648 |
Target: 5'- aGCGUUGGCGgacgCGcCGGU---UGCGCGc -3' miRNA: 3'- cCGCAACCGCa---GC-GCCAgguACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 14098 | 0.69 | 0.415029 |
Target: 5'- cGGCac-GcCGUCGCGGUUCAgguUGCGCGc -3' miRNA: 3'- -CCGcaaCcGCAGCGCCAGGU---ACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 38560 | 0.69 | 0.415029 |
Target: 5'- cGGCGUUG-CG-CGCGGUUCggGCGg- -3' miRNA: 3'- -CCGCAACcGCaGCGCCAGGuaCGCgc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 10772 | 0.67 | 0.500348 |
Target: 5'- cGUGUacUGGCugGUCGCGG-CCAUGCuGuCGg -3' miRNA: 3'- cCGCA--ACCG--CAGCGCCaGGUACG-C-GC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 12428 | 0.69 | 0.415029 |
Target: 5'- uGGCc--GGCGUCGCGGaCg--GCGCGg -3' miRNA: 3'- -CCGcaaCCGCAGCGCCaGguaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 39583 | 0.68 | 0.480671 |
Target: 5'- cGGCGUgccggcgcaGCGUCGCGGcugCCGccucggGCGUGa -3' miRNA: 3'- -CCGCAac-------CGCAGCGCCa--GGUa-----CGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 35069 | 0.69 | 0.43323 |
Target: 5'- cGGCGUccgGGCG-CGCGG-CCu--CGCGg -3' miRNA: 3'- -CCGCAa--CCGCaGCGCCaGGuacGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 40251 | 0.69 | 0.406106 |
Target: 5'- gGGCgGUUGGUcagucugCGCGGUCCucccGCGCu -3' miRNA: 3'- -CCG-CAACCGca-----GCGCCAGGua--CGCGc -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 46905 | 0.7 | 0.363351 |
Target: 5'- gGGCGgugcGGUGUggUGCGG-CCcgGCGCGc -3' miRNA: 3'- -CCGCaa--CCGCA--GCGCCaGGuaCGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 38851 | 0.68 | 0.480671 |
Target: 5'- aGCug-GGCGcgccgCGCGG-CCAUGUGCGc -3' miRNA: 3'- cCGcaaCCGCa----GCGCCaGGUACGCGC- -5' |
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23932 | 3' | -58.9 | NC_005262.1 | + | 22891 | 0.68 | 0.442503 |
Target: 5'- cGGCGagGGCGUaguacgGUGGUCgguucuCGUGUGCGg -3' miRNA: 3'- -CCGCaaCCGCAg-----CGCCAG------GUACGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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