miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 3' -58.9 NC_005262.1 + 18793 0.66 0.571671
Target:  5'- cGUGUUGGCGUcCGCcG-CCugccGCGCGg -3'
miRNA:   3'- cCGCAACCGCA-GCGcCaGGua--CGCGC- -5'
23932 3' -58.9 NC_005262.1 + 17128 0.66 0.571671
Target:  5'- cGGCG--GGCGUCGgugcCGGcgCCAUGCuGCc -3'
miRNA:   3'- -CCGCaaCCGCAGC----GCCa-GGUACG-CGc -5'
23932 3' -58.9 NC_005262.1 + 21805 0.66 0.592554
Target:  5'- gGGCGUU--CGUCGC-GUUC-UGCGCGg -3'
miRNA:   3'- -CCGCAAccGCAGCGcCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 52309 0.68 0.470975
Target:  5'- aGCuc-GGCGaCGCGGcCCAUGUGCu -3'
miRNA:   3'- cCGcaaCCGCaGCGCCaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 52759 0.7 0.339238
Target:  5'- cGGCcuGUUGcuGCG-CGCGGUCU-UGCGCGa -3'
miRNA:   3'- -CCG--CAAC--CGCaGCGCCAGGuACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 24093 0.69 0.424071
Target:  5'- ------aGCGUCGCGGUCgAUGCgGCGg -3'
miRNA:   3'- ccgcaacCGCAGCGCCAGgUACG-CGC- -5'
23932 3' -58.9 NC_005262.1 + 10780 0.69 0.397304
Target:  5'- cGCGccgGGCG-CGCGGUaCUGcUGCGCGa -3'
miRNA:   3'- cCGCaa-CCGCaGCGCCA-GGU-ACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 12594 0.7 0.339238
Target:  5'- cGGCGa-GGCGUCGCGGaUgA-GCGCGc -3'
miRNA:   3'- -CCGCaaCCGCAGCGCCaGgUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 49221 0.73 0.242318
Target:  5'- gGGCGgccucGGCGgcgCGCaGUCCGcGCGCGa -3'
miRNA:   3'- -CCGCaa---CCGCa--GCGcCAGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 35839 0.73 0.236359
Target:  5'- cGGCGUcGGCGcCGCGaccgcccagauGUuuGUGCGCGg -3'
miRNA:   3'- -CCGCAaCCGCaGCGC-----------CAggUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 5181 0.74 0.219216
Target:  5'- cGGCGUcgcgGGCGcgggCGCGG-CCG-GCGCGa -3'
miRNA:   3'- -CCGCAa---CCGCa---GCGCCaGGUaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 22659 0.68 0.451887
Target:  5'- aGGCGgaaUGGCuucagggCGCGGaCCAgUGCGCa -3'
miRNA:   3'- -CCGCa--ACCGca-----GCGCCaGGU-ACGCGc -5'
23932 3' -58.9 NC_005262.1 + 56354 0.68 0.490464
Target:  5'- cGGCGUgccccGCGagcagaUCGC-GUUCAUGCGCGa -3'
miRNA:   3'- -CCGCAac---CGC------AGCGcCAGGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 60127 0.67 0.520373
Target:  5'- gGGCGccaGCGUCGCGGcgaaggCAUGgGCGa -3'
miRNA:   3'- -CCGCaacCGCAGCGCCag----GUACgCGC- -5'
23932 3' -58.9 NC_005262.1 + 5607 0.67 0.524416
Target:  5'- cGCGgcGGCGUCGauGUUCGcgaccucgcccgaguUGCGCa -3'
miRNA:   3'- cCGCaaCCGCAGCgcCAGGU---------------ACGCGc -5'
23932 3' -58.9 NC_005262.1 + 5099 0.67 0.530503
Target:  5'- cGGCGgUGcGCGcC-CGGUucacgaugccugCCAUGCGCGa -3'
miRNA:   3'- -CCGCaAC-CGCaGcGCCA------------GGUACGCGC- -5'
23932 3' -58.9 NC_005262.1 + 18719 0.67 0.534575
Target:  5'- aGGCGUcaaGGCGcuccucagcuucggCGCGG-CUcgGCGCGu -3'
miRNA:   3'- -CCGCAa--CCGCa-------------GCGCCaGGuaCGCGC- -5'
23932 3' -58.9 NC_005262.1 + 60406 0.66 0.571671
Target:  5'- cGGCGgcaUGGCGcaCGUGGUCgAgauCGCGa -3'
miRNA:   3'- -CCGCa--ACCGCa-GCGCCAGgUac-GCGC- -5'
23932 3' -58.9 NC_005262.1 + 29153 0.66 0.613559
Target:  5'- aGGCcgagUGGCG-CGCGa-CCAUGCGUc -3'
miRNA:   3'- -CCGca--ACCGCaGCGCcaGGUACGCGc -5'
23932 3' -58.9 NC_005262.1 + 7017 0.66 0.603045
Target:  5'- cGGCGgcuucggUGGaCGUCa-GGUCCuucGCGCGc -3'
miRNA:   3'- -CCGCa------ACC-GCAGcgCCAGGua-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.