miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 5' -56.7 NC_005262.1 + 52153 0.66 0.651713
Target:  5'- aGCGC-GAc---GCCgGCGCCGCCGa -3'
miRNA:   3'- gUGCGaCUauauCGGgCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 11570 0.66 0.651713
Target:  5'- gCGCGCUGcUAU-GCCgGCGgCgGCCAg -3'
miRNA:   3'- -GUGCGACuAUAuCGGgCGC-GgUGGUa -5'
23932 5' -56.7 NC_005262.1 + 21361 0.66 0.649519
Target:  5'- uGCGCUgcuucguGAUGUugcggccGGCUgGCGCCGCCu- -3'
miRNA:   3'- gUGCGA-------CUAUA-------UCGGgCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 16355 0.66 0.64074
Target:  5'- gCGCGCUGA-----UCgGCGCCGCCGc -3'
miRNA:   3'- -GUGCGACUauaucGGgCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 19447 0.66 0.64074
Target:  5'- aGCGCUGGgcguUGGCCuCGaUGCuCACCGg -3'
miRNA:   3'- gUGCGACUau--AUCGG-GC-GCG-GUGGUa -5'
23932 5' -56.7 NC_005262.1 + 19080 0.66 0.64074
Target:  5'- cCGCGCuccuugaacUGAUGcAGCCaCGcCGUCACCAa -3'
miRNA:   3'- -GUGCG---------ACUAUaUCGG-GC-GCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 63553 0.66 0.629759
Target:  5'- cCGCGC-GAaAUGuCCCGcCGCCGCCGg -3'
miRNA:   3'- -GUGCGaCUaUAUcGGGC-GCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 4816 0.66 0.607812
Target:  5'- aGCGCUGGUuucGCCgGCGCgACgCAg -3'
miRNA:   3'- gUGCGACUAuauCGGgCGCGgUG-GUa -5'
23932 5' -56.7 NC_005262.1 + 11616 0.66 0.604526
Target:  5'- gCACGCUGGUcAUgcccucggcgucgaGGCCgggguaguugCGCGCCGCCu- -3'
miRNA:   3'- -GUGCGACUA-UA--------------UCGG----------GCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 22501 0.67 0.595773
Target:  5'- cCGCGCcauaccuUGAUGUcGCCCacGCGCgGCCGa -3'
miRNA:   3'- -GUGCG-------ACUAUAuCGGG--CGCGgUGGUa -5'
23932 5' -56.7 NC_005262.1 + 14421 0.67 0.58595
Target:  5'- cCGCGgUGAUGaacGCgCGCGUCGCCGa -3'
miRNA:   3'- -GUGCgACUAUau-CGgGCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 28408 0.67 0.58595
Target:  5'- gCGCGC-GGUAUugAGCgCCGCGUgCGCCAg -3'
miRNA:   3'- -GUGCGaCUAUA--UCG-GGCGCG-GUGGUa -5'
23932 5' -56.7 NC_005262.1 + 40947 0.67 0.58595
Target:  5'- aACGCUGGcgagAUAGCCgacgaGCGCCuucGCCGc -3'
miRNA:   3'- gUGCGACUa---UAUCGGg----CGCGG---UGGUa -5'
23932 5' -56.7 NC_005262.1 + 40424 0.67 0.58595
Target:  5'- uCACGUUGcg--GGCCUuCGCCGCCGc -3'
miRNA:   3'- -GUGCGACuauaUCGGGcGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 46184 0.67 0.582682
Target:  5'- uCGCGCUGcUGgcGCUCcagcuccgcgcgcuGCGCCGCCAg -3'
miRNA:   3'- -GUGCGACuAUauCGGG--------------CGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 28494 0.67 0.564241
Target:  5'- cCACGCgugaccUGAUGUgggcgggcccgAGCCCGUaCCGCCAc -3'
miRNA:   3'- -GUGCG------ACUAUA-----------UCGGGCGcGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 10908 0.67 0.553464
Target:  5'- -uCGCUGGUGUAGUgCGCGUaCugCGUc -3'
miRNA:   3'- guGCGACUAUAUCGgGCGCG-GugGUA- -5'
23932 5' -56.7 NC_005262.1 + 57298 0.67 0.553464
Target:  5'- gCGCGCUGAUcgucgagcggGUugcgaacuucugGGCCCGCGUCgauGCCGg -3'
miRNA:   3'- -GUGCGACUA----------UA------------UCGGGCGCGG---UGGUa -5'
23932 5' -56.7 NC_005262.1 + 9350 0.67 0.551315
Target:  5'- uGCGCUGAUacuuccgGUcggcgcgcgcggcGGCCUGCGCCuCCGc -3'
miRNA:   3'- gUGCGACUA-------UA-------------UCGGGCGCGGuGGUa -5'
23932 5' -56.7 NC_005262.1 + 52922 0.67 0.542749
Target:  5'- -cCGCUcGAUcuacgacGGCCUGCGCCGCCu- -3'
miRNA:   3'- guGCGA-CUAua-----UCGGGCGCGGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.