miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 5' -56.7 NC_005262.1 + 28408 0.67 0.58595
Target:  5'- gCGCGC-GGUAUugAGCgCCGCGUgCGCCAg -3'
miRNA:   3'- -GUGCGaCUAUA--UCG-GGCGCG-GUGGUa -5'
23932 5' -56.7 NC_005262.1 + 11480 0.68 0.490347
Target:  5'- gCGCGC-GAgcacAUGGgCCGCGUCGCCGa -3'
miRNA:   3'- -GUGCGaCUa---UAUCgGGCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 3284 0.68 0.521535
Target:  5'- uCACGCUcuuggcGGCCUGCGCCGCgCGg -3'
miRNA:   3'- -GUGCGAcuaua-UCGGGCGCGGUG-GUa -5'
23932 5' -56.7 NC_005262.1 + 27061 0.68 0.511048
Target:  5'- uGCGCaGAacUGcGCCCGCGgCGCCAg -3'
miRNA:   3'- gUGCGaCUauAU-CGGGCGCgGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 5161 0.69 0.460054
Target:  5'- gCGCGCUGAUcgGUgacGGCCgGCGUCGCgGg -3'
miRNA:   3'- -GUGCGACUA--UA---UCGGgCGCGGUGgUa -5'
23932 5' -56.7 NC_005262.1 + 9970 0.69 0.448217
Target:  5'- cCGCGCcGGUGgucagcucgauGCCCGUGCCGCUGUc -3'
miRNA:   3'- -GUGCGaCUAUau---------CGGGCGCGGUGGUA- -5'
23932 5' -56.7 NC_005262.1 + 62635 0.7 0.393513
Target:  5'- cCGCGCagGAUGgcaAGCCCGCGCgGCa-- -3'
miRNA:   3'- -GUGCGa-CUAUa--UCGGGCGCGgUGgua -5'
23932 5' -56.7 NC_005262.1 + 23023 0.7 0.402634
Target:  5'- aGCGUUGAUcgugccgccagcAUAGCCguugauuuggaaCGCGCCGCCGc -3'
miRNA:   3'- gUGCGACUA------------UAUCGG------------GCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 44241 0.7 0.421271
Target:  5'- aCAuCGC-GAgcgAUGGCUCGCGCCACUg- -3'
miRNA:   3'- -GU-GCGaCUa--UAUCGGGCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 13400 0.71 0.366968
Target:  5'- gGCGCUGAUcgccgcgcGGUUCGCGUCGCCAc -3'
miRNA:   3'- gUGCGACUAua------UCGGGCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 31004 0.71 0.349969
Target:  5'- aACGCg---AUGGCCggCGCGCCGCCGg -3'
miRNA:   3'- gUGCGacuaUAUCGG--GCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 42538 0.72 0.294232
Target:  5'- gGCGCUGA---AGCCCGCucggaucGCCGCCu- -3'
miRNA:   3'- gUGCGACUauaUCGGGCG-------CGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 18446 0.74 0.222508
Target:  5'- -uUGCUGGUucaggacGCCCGCGCCGCCu- -3'
miRNA:   3'- guGCGACUAuau----CGGGCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 25890 1.06 0.001167
Target:  5'- cCACGCUGAUAUAGCCCGCGCCACCAUa -3'
miRNA:   3'- -GUGCGACUAUAUCGGGCGCGGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.