miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23932 5' -56.7 NC_005262.1 + 28408 0.67 0.58595
Target:  5'- gCGCGC-GGUAUugAGCgCCGCGUgCGCCAg -3'
miRNA:   3'- -GUGCGaCUAUA--UCG-GGCGCG-GUGGUa -5'
23932 5' -56.7 NC_005262.1 + 28494 0.67 0.564241
Target:  5'- cCACGCgugaccUGAUGUgggcgggcccgAGCCCGUaCCGCCAc -3'
miRNA:   3'- -GUGCG------ACUAUA-----------UCGGGCGcGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 31004 0.71 0.349969
Target:  5'- aACGCg---AUGGCCggCGCGCCGCCGg -3'
miRNA:   3'- gUGCGacuaUAUCGG--GCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 33340 0.67 0.542749
Target:  5'- -uCGCUGcgc-GGCaCCGUGCCGCCGa -3'
miRNA:   3'- guGCGACuauaUCG-GGCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 40424 0.67 0.58595
Target:  5'- uCACGUUGcg--GGCCUuCGCCGCCGc -3'
miRNA:   3'- -GUGCGACuauaUCGGGcGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 40947 0.67 0.58595
Target:  5'- aACGCUGGcgagAUAGCCgacgaGCGCCuucGCCGc -3'
miRNA:   3'- gUGCGACUa---UAUCGGg----CGCGG---UGGUa -5'
23932 5' -56.7 NC_005262.1 + 42538 0.72 0.294232
Target:  5'- gGCGCUGA---AGCCCGCucggaucGCCGCCu- -3'
miRNA:   3'- gUGCGACUauaUCGGGCG-------CGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 44241 0.7 0.421271
Target:  5'- aCAuCGC-GAgcgAUGGCUCGCGCCACUg- -3'
miRNA:   3'- -GU-GCGaCUa--UAUCGGGCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 46184 0.67 0.582682
Target:  5'- uCGCGCUGcUGgcGCUCcagcuccgcgcgcuGCGCCGCCAg -3'
miRNA:   3'- -GUGCGACuAUauCGGG--------------CGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 52153 0.66 0.651713
Target:  5'- aGCGC-GAc---GCCgGCGCCGCCGa -3'
miRNA:   3'- gUGCGaCUauauCGGgCGCGGUGGUa -5'
23932 5' -56.7 NC_005262.1 + 52922 0.67 0.542749
Target:  5'- -cCGCUcGAUcuacgacGGCCUGCGCCGCCu- -3'
miRNA:   3'- guGCGA-CUAua-----UCGGGCGCGGUGGua -5'
23932 5' -56.7 NC_005262.1 + 57298 0.67 0.553464
Target:  5'- gCGCGCUGAUcgucgagcggGUugcgaacuucugGGCCCGCGUCgauGCCGg -3'
miRNA:   3'- -GUGCGACUA----------UA------------UCGGGCGCGG---UGGUa -5'
23932 5' -56.7 NC_005262.1 + 62635 0.7 0.393513
Target:  5'- cCGCGCagGAUGgcaAGCCCGCGCgGCa-- -3'
miRNA:   3'- -GUGCGa-CUAUa--UCGGGCGCGgUGgua -5'
23932 5' -56.7 NC_005262.1 + 63553 0.66 0.629759
Target:  5'- cCGCGC-GAaAUGuCCCGcCGCCGCCGg -3'
miRNA:   3'- -GUGCGaCUaUAUcGGGC-GCGGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.