Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23932 | 5' | -56.7 | NC_005262.1 | + | 19080 | 0.66 | 0.64074 |
Target: 5'- cCGCGCuccuugaacUGAUGcAGCCaCGcCGUCACCAa -3' miRNA: 3'- -GUGCG---------ACUAUaUCGG-GC-GCGGUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 18446 | 0.74 | 0.222508 |
Target: 5'- -uUGCUGGUucaggacGCCCGCGCCGCCu- -3' miRNA: 3'- guGCGACUAuau----CGGGCGCGGUGGua -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 16355 | 0.66 | 0.64074 |
Target: 5'- gCGCGCUGA-----UCgGCGCCGCCGc -3' miRNA: 3'- -GUGCGACUauaucGGgCGCGGUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 14421 | 0.67 | 0.58595 |
Target: 5'- cCGCGgUGAUGaacGCgCGCGUCGCCGa -3' miRNA: 3'- -GUGCgACUAUau-CGgGCGCGGUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 13400 | 0.71 | 0.366968 |
Target: 5'- gGCGCUGAUcgccgcgcGGUUCGCGUCGCCAc -3' miRNA: 3'- gUGCGACUAua------UCGGGCGCGGUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 11616 | 0.66 | 0.604526 |
Target: 5'- gCACGCUGGUcAUgcccucggcgucgaGGCCgggguaguugCGCGCCGCCu- -3' miRNA: 3'- -GUGCGACUA-UA--------------UCGG----------GCGCGGUGGua -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 11570 | 0.66 | 0.651713 |
Target: 5'- gCGCGCUGcUAU-GCCgGCGgCgGCCAg -3' miRNA: 3'- -GUGCGACuAUAuCGGgCGC-GgUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 11480 | 0.68 | 0.490347 |
Target: 5'- gCGCGC-GAgcacAUGGgCCGCGUCGCCGa -3' miRNA: 3'- -GUGCGaCUa---UAUCgGGCGCGGUGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 10908 | 0.67 | 0.553464 |
Target: 5'- -uCGCUGGUGUAGUgCGCGUaCugCGUc -3' miRNA: 3'- guGCGACUAUAUCGgGCGCG-GugGUA- -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 9970 | 0.69 | 0.448217 |
Target: 5'- cCGCGCcGGUGgucagcucgauGCCCGUGCCGCUGUc -3' miRNA: 3'- -GUGCGaCUAUau---------CGGGCGCGGUGGUA- -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 9350 | 0.67 | 0.551315 |
Target: 5'- uGCGCUGAUacuuccgGUcggcgcgcgcggcGGCCUGCGCCuCCGc -3' miRNA: 3'- gUGCGACUA-------UA-------------UCGGGCGCGGuGGUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 5161 | 0.69 | 0.460054 |
Target: 5'- gCGCGCUGAUcgGUgacGGCCgGCGUCGCgGg -3' miRNA: 3'- -GUGCGACUA--UA---UCGGgCGCGGUGgUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 4816 | 0.66 | 0.607812 |
Target: 5'- aGCGCUGGUuucGCCgGCGCgACgCAg -3' miRNA: 3'- gUGCGACUAuauCGGgCGCGgUG-GUa -5' |
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23932 | 5' | -56.7 | NC_005262.1 | + | 3284 | 0.68 | 0.521535 |
Target: 5'- uCACGCUcuuggcGGCCUGCGCCGCgCGg -3' miRNA: 3'- -GUGCGAcuaua-UCGGGCGCGGUG-GUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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