miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23933 3' -61.9 NC_005262.1 + 56135 0.66 0.458731
Target:  5'- uGGCGUGccgCUCGcggagauaGCCGUcgccGCCGGCg- -3'
miRNA:   3'- gCCGCACua-GAGC--------UGGCG----CGGCCGga -5'
23933 3' -61.9 NC_005262.1 + 49158 0.66 0.458731
Target:  5'- gGGCGUGca---GGCCGCaUCGGCCg -3'
miRNA:   3'- gCCGCACuagagCUGGCGcGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 59120 0.66 0.458731
Target:  5'- gCGGCccGAUC-CGGCCGCGgcaUGGCUg -3'
miRNA:   3'- -GCCGcaCUAGaGCUGGCGCg--GCCGGa -5'
23933 3' -61.9 NC_005262.1 + 34051 0.66 0.458731
Target:  5'- aGGCG-GGUUagcCGGgaGCGCCGGCUg -3'
miRNA:   3'- gCCGCaCUAGa--GCUggCGCGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 5142 0.66 0.449428
Target:  5'- gCGGCGcUGAUCcugcUCGGCgCGCugaucggugacgGCCGGCg- -3'
miRNA:   3'- -GCCGC-ACUAG----AGCUG-GCG------------CGGCCGga -5'
23933 3' -61.9 NC_005262.1 + 35091 0.66 0.449428
Target:  5'- gCGGCG-GAacucgucgauaUCgUCGACCGCGCCuuCCUc -3'
miRNA:   3'- -GCCGCaCU-----------AG-AGCUGGCGCGGccGGA- -5'
23933 3' -61.9 NC_005262.1 + 13325 0.66 0.449428
Target:  5'- aGGCuUGAUgUCGAauaCCGUGC-GGCCg -3'
miRNA:   3'- gCCGcACUAgAGCU---GGCGCGgCCGGa -5'
23933 3' -61.9 NC_005262.1 + 7843 0.66 0.44023
Target:  5'- cCGGCGUGAccaugaUCUgaCGGCCGCcGCCcucgaucGCCg -3'
miRNA:   3'- -GCCGCACU------AGA--GCUGGCG-CGGc------CGGa -5'
23933 3' -61.9 NC_005262.1 + 52960 0.66 0.44023
Target:  5'- cCGGCGgcaaGGUgCUCGAgCCGgGCauggguauCGGCCUg -3'
miRNA:   3'- -GCCGCa---CUA-GAGCU-GGCgCG--------GCCGGA- -5'
23933 3' -61.9 NC_005262.1 + 4997 0.66 0.43114
Target:  5'- aCGGCGccGAUCacgucgUCGACCcaGCGCCGGa-- -3'
miRNA:   3'- -GCCGCa-CUAG------AGCUGG--CGCGGCCgga -5'
23933 3' -61.9 NC_005262.1 + 57638 0.66 0.43114
Target:  5'- aGcGCGUGAcgaUCUCGAUCaGCaaaaucCCGGCCg -3'
miRNA:   3'- gC-CGCACU---AGAGCUGG-CGc-----GGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 32712 0.66 0.43114
Target:  5'- gGGCGacaucaucGAgCUCGGCgUGCuGCCGGCCg -3'
miRNA:   3'- gCCGCa-------CUaGAGCUG-GCG-CGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 3661 0.66 0.43114
Target:  5'- cCGGuUGUacUCgCGGCCGuCGCUGGCCg -3'
miRNA:   3'- -GCC-GCAcuAGaGCUGGC-GCGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 13021 0.66 0.422161
Target:  5'- uCGGCuUGAUCUCGaACCGCaCCuuGCCc -3'
miRNA:   3'- -GCCGcACUAGAGC-UGGCGcGGc-CGGa -5'
23933 3' -61.9 NC_005262.1 + 56731 0.66 0.422161
Target:  5'- aGGCGUcgGcgUUCGacauggccGCCGCGCUGGCg- -3'
miRNA:   3'- gCCGCA--CuaGAGC--------UGGCGCGGCCGga -5'
23933 3' -61.9 NC_005262.1 + 50273 0.66 0.422161
Target:  5'- gGGCG------CGcCCGCGCCGGCCg -3'
miRNA:   3'- gCCGCacuagaGCuGGCGCGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 57222 0.66 0.413295
Target:  5'- uCGGCG-GcAUCgCGACgCGCGCC-GCCa -3'
miRNA:   3'- -GCCGCaC-UAGaGCUG-GCGCGGcCGGa -5'
23933 3' -61.9 NC_005262.1 + 57019 0.66 0.413295
Target:  5'- gGGCGcGAUCUUcaACCGCuucaaggaGCUGGCCg -3'
miRNA:   3'- gCCGCaCUAGAGc-UGGCG--------CGGCCGGa -5'
23933 3' -61.9 NC_005262.1 + 38048 0.66 0.413295
Target:  5'- gGGcCGUGAg--CGGCU-UGCCGGCCUg -3'
miRNA:   3'- gCC-GCACUagaGCUGGcGCGGCCGGA- -5'
23933 3' -61.9 NC_005262.1 + 56916 0.66 0.413295
Target:  5'- cCGGCGaGAUCaaGGCCGCGCuCGagaagcgcacGCCg -3'
miRNA:   3'- -GCCGCaCUAGagCUGGCGCG-GC----------CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.