miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23933 5' -47.4 NC_005262.1 + 12685 0.66 0.995312
Target:  5'- ----aCCGGCGCGucGAGcacgaucgccUUGACGUCc -3'
miRNA:   3'- ccuuaGGUCGCGCuuUUU----------AGCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 9671 0.66 0.995312
Target:  5'- cGAG-CgAGUagGCGAGGGcgccGUCGACGUCg -3'
miRNA:   3'- cCUUaGgUCG--CGCUUUU----UAGCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 49871 0.66 0.995312
Target:  5'- cGGAAgcagcucagCCGGC-CGGAAAcgGUCGAuUGUCg -3'
miRNA:   3'- -CCUUa--------GGUCGcGCUUUU--UAGCU-GCAG- -5'
23933 5' -47.4 NC_005262.1 + 35416 0.66 0.994824
Target:  5'- ---cUCCAGCccgGCGAcguguucguguUCGACGUCg -3'
miRNA:   3'- ccuuAGGUCG---CGCUuuuu-------AGCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 30182 0.66 0.994476
Target:  5'- aGGAGaUCGGCGagaAGAAAUCGACGc- -3'
miRNA:   3'- -CCUUaGGUCGCgc-UUUUUAGCUGCag -5'
23933 5' -47.4 NC_005262.1 + 23786 0.66 0.994476
Target:  5'- gGGAGgcUUCAGCGUGAuGAGcgagCGAUGUg -3'
miRNA:   3'- -CCUU--AGGUCGCGCUuUUUa---GCUGCAg -5'
23933 5' -47.4 NC_005262.1 + 17111 0.66 0.994386
Target:  5'- aGGAgGUCCAccGCGCGGcgauggaccacaaGAAcgCGcGCGUCg -3'
miRNA:   3'- -CCU-UAGGU--CGCGCU-------------UUUuaGC-UGCAG- -5'
23933 5' -47.4 NC_005262.1 + 58560 0.66 0.993523
Target:  5'- ----aUCAGCGCGGc--GUCGACGcCa -3'
miRNA:   3'- ccuuaGGUCGCGCUuuuUAGCUGCaG- -5'
23933 5' -47.4 NC_005262.1 + 41026 0.66 0.992891
Target:  5'- gGGAAUgCCGGgGUGccgcucuuuuucuGGGUCGugGUCa -3'
miRNA:   3'- -CCUUA-GGUCgCGCuu-----------UUUAGCugCAG- -5'
23933 5' -47.4 NC_005262.1 + 13587 0.66 0.992443
Target:  5'- uGGAAgCCGGCGUGGuucgcuGAGAUCGAg--- -3'
miRNA:   3'- -CCUUaGGUCGCGCU------UUUUAGCUgcag -5'
23933 5' -47.4 NC_005262.1 + 33320 0.66 0.992443
Target:  5'- aGGAuUUCGGCGCc----GUCGAUGUUg -3'
miRNA:   3'- -CCUuAGGUCGCGcuuuuUAGCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 12986 0.66 0.992443
Target:  5'- ---cUCCGGCGCGAAGcGcuccaugcccUCGGCGa- -3'
miRNA:   3'- ccuuAGGUCGCGCUUUuU----------AGCUGCag -5'
23933 5' -47.4 NC_005262.1 + 28775 0.66 0.992443
Target:  5'- ----cUCGGCGCaguGAAGAUgGACGUCg -3'
miRNA:   3'- ccuuaGGUCGCGc--UUUUUAgCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 18043 0.66 0.991225
Target:  5'- -cGAUCaC-GCGCGAGGAGUaCGACaGUCu -3'
miRNA:   3'- ccUUAG-GuCGCGCUUUUUA-GCUG-CAG- -5'
23933 5' -47.4 NC_005262.1 + 24721 0.66 0.991225
Target:  5'- aGGAGcugaucgcgCUGGCGCGcgcGAUCGGCGUg -3'
miRNA:   3'- -CCUUa--------GGUCGCGCuuuUUAGCUGCAg -5'
23933 5' -47.4 NC_005262.1 + 19442 0.66 0.991225
Target:  5'- cGAAcUUCAGCGCG-----UCGACGUUc -3'
miRNA:   3'- cCUU-AGGUCGCGCuuuuuAGCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 2874 0.67 0.989856
Target:  5'- --cGUUCAGCGgGAAGua--GGCGUCg -3'
miRNA:   3'- ccuUAGGUCGCgCUUUuuagCUGCAG- -5'
23933 5' -47.4 NC_005262.1 + 56272 0.67 0.989856
Target:  5'- cGGAcAUCgGGCucgGCGAGcAGUCGGCGa- -3'
miRNA:   3'- -CCU-UAGgUCG---CGCUUuUUAGCUGCag -5'
23933 5' -47.4 NC_005262.1 + 47286 0.67 0.988327
Target:  5'- cGGAcgCC-GCgGCGAAG-AUCGGCGa- -3'
miRNA:   3'- -CCUuaGGuCG-CGCUUUuUAGCUGCag -5'
23933 5' -47.4 NC_005262.1 + 48117 0.67 0.988327
Target:  5'- -cGcgCC-GCGCGcAAGAGcUCGGCGUCg -3'
miRNA:   3'- ccUuaGGuCGCGC-UUUUU-AGCUGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.