miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23934 5' -53.8 NC_005262.1 + 53216 0.66 0.814569
Target:  5'- cUCGCGCCGCgcugcuccGCGGUAcgcUGcG-GCUGCg -3'
miRNA:   3'- cAGUGUGGCG--------UGCCAU---AC-CaCGAUGa -5'
23934 5' -53.8 NC_005262.1 + 8892 0.67 0.765251
Target:  5'- -gCACACCGCacgACGGUccgcucuugGGUGCgcgGCg -3'
miRNA:   3'- caGUGUGGCG---UGCCAua-------CCACGa--UGa -5'
23934 5' -53.8 NC_005262.1 + 54337 0.67 0.733902
Target:  5'- -cCAUACCGUGCaGG-AUGGUGCcGCa -3'
miRNA:   3'- caGUGUGGCGUG-CCaUACCACGaUGa -5'
23934 5' -53.8 NC_005262.1 + 2022 0.68 0.712465
Target:  5'- -aCGCGCUGguCGGUcgGcgcGUGCUACg -3'
miRNA:   3'- caGUGUGGCguGCCAuaC---CACGAUGa -5'
23934 5' -53.8 NC_005262.1 + 41852 0.68 0.70162
Target:  5'- cUCugACCGCcuUGcGUGUGGUGCcGCa -3'
miRNA:   3'- cAGugUGGCGu-GC-CAUACCACGaUGa -5'
23934 5' -53.8 NC_005262.1 + 2553 0.68 0.70162
Target:  5'- -cCAgGCCGC-CGGUGUaGGUGCgccACa -3'
miRNA:   3'- caGUgUGGCGuGCCAUA-CCACGa--UGa -5'
23934 5' -53.8 NC_005262.1 + 9755 0.68 0.679735
Target:  5'- cGUCGC-CCGUGCGcucgAUGGUGCUGu- -3'
miRNA:   3'- -CAGUGuGGCGUGCca--UACCACGAUga -5'
23934 5' -53.8 NC_005262.1 + 3796 0.69 0.64659
Target:  5'- uUCACGCCGCGCaucaucucgaGGaUcgGGUGCaUGCg -3'
miRNA:   3'- cAGUGUGGCGUG----------CC-AuaCCACG-AUGa -5'
23934 5' -53.8 NC_005262.1 + 46903 0.7 0.59121
Target:  5'- -gCGgGCgGUGCGGUGUGGUGCgGCc -3'
miRNA:   3'- caGUgUGgCGUGCCAUACCACGaUGa -5'
23934 5' -53.8 NC_005262.1 + 42887 0.71 0.536689
Target:  5'- --aACGCCGCgagcuACGGggagAUGGUGCUAUc -3'
miRNA:   3'- cagUGUGGCG-----UGCCa---UACCACGAUGa -5'
23934 5' -53.8 NC_005262.1 + 7124 0.72 0.443726
Target:  5'- uGUCGUAUgGUGCGGUAUGGUGCgACg -3'
miRNA:   3'- -CAGUGUGgCGUGCCAUACCACGaUGa -5'
23934 5' -53.8 NC_005262.1 + 9466 0.73 0.424301
Target:  5'- -cCAUcCUGCACGGUAUGGUGCc--- -3'
miRNA:   3'- caGUGuGGCGUGCCAUACCACGauga -5'
23934 5' -53.8 NC_005262.1 + 58382 0.73 0.396139
Target:  5'- uGUCGCAgcucaUCGCACaaaaccGUGUGGUGCUGCa -3'
miRNA:   3'- -CAGUGU-----GGCGUGc-----CAUACCACGAUGa -5'
23934 5' -53.8 NC_005262.1 + 27168 0.81 0.125265
Target:  5'- -aCACcgGCCGCAUGGUGUGGUGCcgUGCUg -3'
miRNA:   3'- caGUG--UGGCGUGCCAUACCACG--AUGA- -5'
23934 5' -53.8 NC_005262.1 + 23894 1.07 0.002148
Target:  5'- uGUCACACCGCACGGUAUGGUGCUACUu -3'
miRNA:   3'- -CAGUGUGGCGUGCCAUACCACGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.