miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 3' -53 NC_005262.1 + 44159 0.66 0.854446
Target:  5'- cGCGcGAucGgGCAGG-AGCGCgGCGgCg -3'
miRNA:   3'- -CGC-CUuuCaCGUCCuUUGCGgCGUgG- -5'
23935 3' -53 NC_005262.1 + 31036 0.66 0.854446
Target:  5'- aGCGGAAguaccgccugcuGGUGCu-GAccGACGCCGaCGCg -3'
miRNA:   3'- -CGCCUU------------UCACGucCU--UUGCGGC-GUGg -5'
23935 3' -53 NC_005262.1 + 42189 0.66 0.854446
Target:  5'- cCGGgcAGU-CAGGGuuCGCCGCGa- -3'
miRNA:   3'- cGCCuuUCAcGUCCUuuGCGGCGUgg -5'
23935 3' -53 NC_005262.1 + 61303 0.66 0.854446
Target:  5'- uCGGGuuGcUGCuGGucgccAAGCGCgGCACCa -3'
miRNA:   3'- cGCCUuuC-ACGuCC-----UUUGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 5317 0.66 0.854446
Target:  5'- uCGGAGcuGGccgGCAGG-AGCuUCGCACCg -3'
miRNA:   3'- cGCCUU--UCa--CGUCCuUUGcGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 49155 0.66 0.845927
Target:  5'- gGUGGGc-GUGCAGGccGCaucgGCCGCAgCg -3'
miRNA:   3'- -CGCCUuuCACGUCCuuUG----CGGCGUgG- -5'
23935 3' -53 NC_005262.1 + 22467 0.66 0.845927
Target:  5'- -gGGGccGUGaacaguuGGGAugucggcaaucGCGCCGCGCCa -3'
miRNA:   3'- cgCCUuuCACgu-----CCUU-----------UGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 37727 0.66 0.845927
Target:  5'- -aGGAcAG-GCAGGGAcggcuugauGCGCCccugcuugcGCGCCg -3'
miRNA:   3'- cgCCUuUCaCGUCCUU---------UGCGG---------CGUGG- -5'
23935 3' -53 NC_005262.1 + 53430 0.66 0.845927
Target:  5'- aCGGAc-GUGCuGuuccuccaGAAGCGCgGCGCCg -3'
miRNA:   3'- cGCCUuuCACGuC--------CUUUGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 61 0.66 0.845927
Target:  5'- cCGGGGAGgccGCGGcucgcGAAGaagucgGCCGCGCCg -3'
miRNA:   3'- cGCCUUUCa--CGUC-----CUUUg-----CGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 52182 0.66 0.845927
Target:  5'- cGCcGAGGgcaugaccagcGUGCAGGAgucgaAGCGCCuGCACg -3'
miRNA:   3'- -CGcCUUU-----------CACGUCCU-----UUGCGG-CGUGg -5'
23935 3' -53 NC_005262.1 + 57732 0.67 0.837183
Target:  5'- cGCGGccuGAcgcaaccccguGGUGCGGuaucgUGCCGCACCa -3'
miRNA:   3'- -CGCC---UU-----------UCACGUCcuuu-GCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 53068 0.67 0.837183
Target:  5'- uCGGuGAGauuuUGCGGG-AGCGCCG-GCCg -3'
miRNA:   3'- cGCCuUUC----ACGUCCuUUGCGGCgUGG- -5'
23935 3' -53 NC_005262.1 + 32850 0.67 0.837183
Target:  5'- uGCGGGAAGUaGC-----GCGCCGUcauGCCg -3'
miRNA:   3'- -CGCCUUUCA-CGuccuuUGCGGCG---UGG- -5'
23935 3' -53 NC_005262.1 + 3827 0.67 0.837183
Target:  5'- -aGGAAGGUGCc--GAGCGCCccGCGCg -3'
miRNA:   3'- cgCCUUUCACGuccUUUGCGG--CGUGg -5'
23935 3' -53 NC_005262.1 + 36584 0.67 0.836296
Target:  5'- cGCGGAucAGUGUAacGGAACGCgGCcgauaguGCCa -3'
miRNA:   3'- -CGCCUu-UCACGUc-CUUUGCGgCG-------UGG- -5'
23935 3' -53 NC_005262.1 + 61590 0.67 0.831832
Target:  5'- cGCGGAcAAGacgcucucgaccgaGCA-GAAGCGCgCGCGCCu -3'
miRNA:   3'- -CGCCU-UUCa-------------CGUcCUUUGCG-GCGUGG- -5'
23935 3' -53 NC_005262.1 + 23855 0.67 0.828222
Target:  5'- -aGGAGAGagGgAGGAAucccGCGCgGCGCa -3'
miRNA:   3'- cgCCUUUCa-CgUCCUU----UGCGgCGUGg -5'
23935 3' -53 NC_005262.1 + 46911 0.67 0.828222
Target:  5'- uGCGGuguGGUGCGgcccggcgcgcGGccGGGCGCCuGCAUCa -3'
miRNA:   3'- -CGCCuu-UCACGU-----------CC--UUUGCGG-CGUGG- -5'
23935 3' -53 NC_005262.1 + 27252 0.67 0.828222
Target:  5'- -aGGAucGUGCGcccGAuaaucccaguCGCCGCGCCg -3'
miRNA:   3'- cgCCUuuCACGUc--CUuu--------GCGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.