Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23935 | 5' | -54.4 | NC_005262.1 | + | 23666 | 1.11 | 0.001241 |
Target: 5'- uGCAGCGCGAGCGUCGUACUUUCGGGAu -3' miRNA: 3'- -CGUCGCGCUCGCAGCAUGAAAGCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 26848 | 0.77 | 0.263088 |
Target: 5'- aGCGGCGCGAGCGUgGUGaucUCGGc- -3' miRNA: 3'- -CGUCGCGCUCGCAgCAUgaaAGCCcu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 17221 | 0.71 | 0.513354 |
Target: 5'- aCGGCGCuGGCGUCGUggucgucguggGCgucgCGGGAg -3' miRNA: 3'- cGUCGCGcUCGCAGCA-----------UGaaa-GCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 33394 | 0.7 | 0.598532 |
Target: 5'- cCAGCGCacGCGgcUCGUGCUguacUCGGGGu -3' miRNA: 3'- cGUCGCGcuCGC--AGCAUGAa---AGCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 36822 | 0.7 | 0.598532 |
Target: 5'- -gGGCGUGAGCGaugccauuucuUCGU-CggUCGGGAu -3' miRNA: 3'- cgUCGCGCUCGC-----------AGCAuGaaAGCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 45348 | 0.69 | 0.627884 |
Target: 5'- gGCGGCGCGGGCGUCcUgaaccagcaauacaGCaccUCGGGu -3' miRNA: 3'- -CGUCGCGCUCGCAGcA--------------UGaa-AGCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 39590 | 0.69 | 0.652915 |
Target: 5'- cCGGCGC-AGCGUCGcgGCUgccgccUCGGGc -3' miRNA: 3'- cGUCGCGcUCGCAGCa-UGAa-----AGCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 13710 | 0.68 | 0.69292 |
Target: 5'- cGCGGCGCGgguucggucggcgcAGCGgccuUCGUcuccgGCUUcgucUCGGGAg -3' miRNA: 3'- -CGUCGCGC--------------UCGC----AGCA-----UGAA----AGCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 18647 | 0.68 | 0.706817 |
Target: 5'- cGCAGCGCGAGCGccuugUCGcGCacgUUCuGGc -3' miRNA: 3'- -CGUCGCGCUCGC-----AGCaUGa--AAGcCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 38546 | 0.68 | 0.717426 |
Target: 5'- gGCGGCGCaggagccGGCGUUGcGCgcggUUCGGGc -3' miRNA: 3'- -CGUCGCGc------UCGCAGCaUGa---AAGCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 35006 | 0.68 | 0.717426 |
Target: 5'- aGCAGCGCGGGCccGUCcGUACcaa-GGcGAa -3' miRNA: 3'- -CGUCGCGCUCG--CAG-CAUGaaagCC-CU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 15832 | 0.68 | 0.717426 |
Target: 5'- -aGGCGCGAGagGUCGUucgcGCcUUCGGuGAa -3' miRNA: 3'- cgUCGCGCUCg-CAGCA----UGaAAGCC-CU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 27008 | 0.68 | 0.727953 |
Target: 5'- aGCAGCaucaGUGAGCGUaacUGCggUCGGGc -3' miRNA: 3'- -CGUCG----CGCUCGCAgc-AUGaaAGCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 31014 | 0.67 | 0.738386 |
Target: 5'- cCGGCGCGccgccGGUGUCGaGCUUgUCGGcGAu -3' miRNA: 3'- cGUCGCGC-----UCGCAGCaUGAA-AGCC-CU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 25073 | 0.67 | 0.748714 |
Target: 5'- cCAGCGCuGAGCGUCGgguauuUGCUgccuucgcCGGGc -3' miRNA: 3'- cGUCGCG-CUCGCAGC------AUGAaa------GCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 11084 | 0.67 | 0.769011 |
Target: 5'- aGCAGCGCGgccucguccGGCGUCGgcCgg-CGGc- -3' miRNA: 3'- -CGUCGCGC---------UCGCAGCauGaaaGCCcu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 33970 | 0.67 | 0.778959 |
Target: 5'- cGCGGCGuCGAGCugcuggacGUCGUGCguaacaUGGGc -3' miRNA: 3'- -CGUCGC-GCUCG--------CAGCAUGaaa---GCCCu -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 34508 | 0.66 | 0.788757 |
Target: 5'- aCGGCGCGGauGCGcuucacgagcUCGUcGCggUUCGGGAu -3' miRNA: 3'- cGUCGCGCU--CGC----------AGCA-UGa-AAGCCCU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 52457 | 0.66 | 0.788757 |
Target: 5'- cGC-GCGCGAGCGgCGU-CUUgCGGaGGa -3' miRNA: 3'- -CGuCGCGCUCGCaGCAuGAAaGCC-CU- -5' |
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23935 | 5' | -54.4 | NC_005262.1 | + | 35578 | 0.66 | 0.788757 |
Target: 5'- -gAGCGCGAaUGUUGUGCUcggcgCGGGc -3' miRNA: 3'- cgUCGCGCUcGCAGCAUGAaa---GCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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