miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 14329 0.66 0.706712
Target:  5'- uGCGCGcuucagcgugcucuuGCUGAccuucucggucacgAUCUuCGCGAguGCGCGGu -3'
miRNA:   3'- -CGCGC---------------CGACU--------------UAGGcGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17096 0.66 0.705676
Target:  5'- aCGCGGCggg--CCGCGagGAgguccaccGCGCGGc -3'
miRNA:   3'- cGCGCCGacuuaGGCGCg-CU--------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 29309 0.66 0.705676
Target:  5'- cGCGCGcCg----CCGCGCGGAUGUGc -3'
miRNA:   3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 12323 0.66 0.705676
Target:  5'- aUGCGGCUcgugCCGCaGCGcGCgGCGGc -3'
miRNA:   3'- cGCGCCGAcuuaGGCG-CGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 63540 0.66 0.702566
Target:  5'- aGCGCGuGUac-GUCCGCGCGAaaugucccgccgccGCcgGCGGu -3'
miRNA:   3'- -CGCGC-CGacuUAGGCGCGCU--------------UG--CGCC- -5'
23936 3' -57.4 NC_005262.1 + 30893 0.66 0.699449
Target:  5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3'
miRNA:   3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 35567 0.66 0.695285
Target:  5'- gGCGCGG--GAAagaGCGCGAauguugugcucgGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaggCGCGCU------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 18790 0.66 0.695285
Target:  5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3'
miRNA:   3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 56907 0.66 0.695285
Target:  5'- aCGCGGCUcGAAaaCGCGau--CGCGGc -3'
miRNA:   3'- cGCGCCGA-CUUagGCGCgcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12821 0.66 0.695285
Target:  5'- gGCGCGuGaaGAAggaGCGCGGccuCGCGGg -3'
miRNA:   3'- -CGCGC-CgaCUUaggCGCGCUu--GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 48411 0.66 0.695285
Target:  5'- aGCGCGGCgaAAUCCcgaacaCGaCGGACgGCGGc -3'
miRNA:   3'- -CGCGCCGacUUAGGc-----GC-GCUUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 17490 0.66 0.695285
Target:  5'- aGCGC-GCg----CCGCGCGcGACGCGu -3'
miRNA:   3'- -CGCGcCGacuuaGGCGCGC-UUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 10214 0.66 0.684838
Target:  5'- uGCGCGGUacaUGcugccGGUCaGCGCGuGCGCGc -3'
miRNA:   3'- -CGCGCCG---AC-----UUAGgCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 17186 0.66 0.684838
Target:  5'- cGCGUcgGGCgGGAUCUGUGgCGucUGCGGc -3'
miRNA:   3'- -CGCG--CCGaCUUAGGCGC-GCuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51333 0.66 0.684838
Target:  5'- cGCGCGGCaagaucGAAUCCGCcauGC-AGCuCGGc -3'
miRNA:   3'- -CGCGCCGa-----CUUAGGCG---CGcUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 11550 0.66 0.684838
Target:  5'- cGC-CGGCUGAagugcAUCaCGCGCGcugcuaugccGGCgGCGGc -3'
miRNA:   3'- -CGcGCCGACU-----UAG-GCGCGC----------UUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 54989 0.66 0.68379
Target:  5'- gGCGCGGCauucagGAAggcgacauguaccUCgCGCacGCGGucgGCGCGGg -3'
miRNA:   3'- -CGCGCCGa-----CUU-------------AG-GCG--CGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 28697 0.66 0.678546
Target:  5'- gGCGCGGUcGAcgauaucgacgaguUCCGcCGCGAggccGCGCGc -3'
miRNA:   3'- -CGCGCCGaCUu-------------AGGC-GCGCU----UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 8646 0.66 0.675395
Target:  5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3'
miRNA:   3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 17608 0.66 0.674344
Target:  5'- cGCGCGgaGCUGGAgcgCCagcaGCGCGAGCuCGc -3'
miRNA:   3'- -CGCGC--CGACUUa--GG----CGCGCUUGcGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.