miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 8646 0.66 0.675395
Target:  5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3'
miRNA:   3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 14329 0.66 0.706712
Target:  5'- uGCGCGcuucagcgugcucuuGCUGAccuucucggucacgAUCUuCGCGAguGCGCGGu -3'
miRNA:   3'- -CGCGC---------------CGACU--------------UAGGcGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 29309 0.66 0.705676
Target:  5'- cGCGCGcCg----CCGCGCGGAUGUGc -3'
miRNA:   3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 39601 0.66 0.674344
Target:  5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3'
miRNA:   3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 35567 0.66 0.695285
Target:  5'- gGCGCGG--GAAagaGCGCGAauguugugcucgGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaggCGCGCU------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 30893 0.66 0.699449
Target:  5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3'
miRNA:   3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 46732 0.66 0.663813
Target:  5'- cGCGCcuaucGGCgccGUgCGCGCGAcgagcuCGCGGa -3'
miRNA:   3'- -CGCG-----CCGacuUAgGCGCGCUu-----GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 18790 0.66 0.695285
Target:  5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3'
miRNA:   3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 38546 0.66 0.663813
Target:  5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3'
miRNA:   3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52968 0.66 0.674344
Target:  5'- aGCGCGGCgGA---CGCGCauGCGCuGGu -3'
miRNA:   3'- -CGCGCCGaCUuagGCGCGcuUGCG-CC- -5'
23936 3' -57.4 NC_005262.1 + 23138 0.66 0.674344
Target:  5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3'
miRNA:   3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 57665 0.67 0.632092
Target:  5'- -gGCGGCacGAUCgacuucucgCGCGcCGGGCGCGGc -3'
miRNA:   3'- cgCGCCGacUUAG---------GCGC-GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 41163 0.67 0.642678
Target:  5'- aGCGCGcGCagGAGggcaCCGcCGCGAuCGCGu -3'
miRNA:   3'- -CGCGC-CGa-CUUa---GGC-GCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 20483 0.67 0.609873
Target:  5'- -aGCGGC-GAGUgcguaaUCGCGCGcaccaucGGCGCGGc -3'
miRNA:   3'- cgCGCCGaCUUA------GGCGCGC-------UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 40382 0.67 0.61093
Target:  5'- uCGaCGGcCUGucugCCGCGUucGCGCGGa -3'
miRNA:   3'- cGC-GCC-GACuua-GGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 39914 0.67 0.61093
Target:  5'- cGUGCGGgUGAcacaauacGUgUGCGCc-GCGCGGg -3'
miRNA:   3'- -CGCGCCgACU--------UAgGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 55625 0.67 0.61093
Target:  5'- uGCGCaGCaaGAAgccgggCCGCGCGcuCGUGGc -3'
miRNA:   3'- -CGCGcCGa-CUUa-----GGCGCGCuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43577 0.67 0.600371
Target:  5'- aCGUGGgaGGucgagGUCaGCGCGAACGCa- -3'
miRNA:   3'- cGCGCCgaCU-----UAGgCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 7013 0.67 0.61093
Target:  5'- aGCGCGGCggcuucggUGGAcgucagguccUUCGCGCGcauCGCGa -3'
miRNA:   3'- -CGCGCCG--------ACUU----------AGGCGCGCuu-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 8194 0.67 0.632092
Target:  5'- cGC-CGGaaGGcgCCGCaGCGAugauccGCGCGGg -3'
miRNA:   3'- -CGcGCCgaCUuaGGCG-CGCU------UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.