miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 8194 0.67 0.632092
Target:  5'- cGC-CGGaaGGcgCCGCaGCGAugauccGCGCGGg -3'
miRNA:   3'- -CGcGCCgaCUuaGGCG-CGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 57665 0.67 0.632092
Target:  5'- -gGCGGCacGAUCgacuucucgCGCGcCGGGCGCGGc -3'
miRNA:   3'- cgCGCCGacUUAG---------GCGC-GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13129 0.67 0.632092
Target:  5'- cCGUGGCacaauuaGGuccgCCGCGCGcgcuGCGCGGc -3'
miRNA:   3'- cGCGCCGa------CUua--GGCGCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13362 0.67 0.632092
Target:  5'- aGCGCuGCgccagcacgGAAUCCuGCGCcuGGGCGCGc -3'
miRNA:   3'- -CGCGcCGa--------CUUAGG-CGCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 36255 0.67 0.600371
Target:  5'- cCGgGGCUGAgcucgcccucGUCgGUGC--GCGCGGg -3'
miRNA:   3'- cGCgCCGACU----------UAGgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 46185 0.67 0.600371
Target:  5'- cGCGCuGCUGGcgcuccagcUCCGCGCGcuGCGCc- -3'
miRNA:   3'- -CGCGcCGACUu--------AGGCGCGCu-UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 10457 0.67 0.61093
Target:  5'- cGCGCGGUcggcGAGguagCgGCGC--GCGCGGu -3'
miRNA:   3'- -CGCGCCGa---CUUa---GgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 41163 0.67 0.642678
Target:  5'- aGCGCGcGCagGAGggcaCCGcCGCGAuCGCGu -3'
miRNA:   3'- -CGCGC-CGa-CUUa---GGC-GCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 16619 0.67 0.638444
Target:  5'- cGCGUuucGaGCUGGGcgauaucgucgugCUGCGCGAgcACGCGGa -3'
miRNA:   3'- -CGCG---C-CGACUUa------------GGCGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 32036 0.67 0.642678
Target:  5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3'
miRNA:   3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 55759 0.67 0.642678
Target:  5'- aCGCGcGCUGcgucAGUCCuGaCGCGAGC-CGGa -3'
miRNA:   3'- cGCGC-CGAC----UUAGG-C-GCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 50422 0.67 0.642678
Target:  5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3'
miRNA:   3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 3733 0.67 0.642678
Target:  5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 58242 0.67 0.642678
Target:  5'- uGCGUGGUgacGAUCCGCGCaucGAGCaCGa -3'
miRNA:   3'- -CGCGCCGac-UUAGGCGCG---CUUGcGCc -5'
23936 3' -57.4 NC_005262.1 + 4659 0.67 0.641619
Target:  5'- cGCGCGGC-GAcgCgGCcCGGccgguucgccucgGCGCGGu -3'
miRNA:   3'- -CGCGCCGaCUuaGgCGcGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12223 0.67 0.638444
Target:  5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3'
miRNA:   3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 47132 0.67 0.631034
Target:  5'- gGCuGCGGCcacuUGAacuugucGUCCGCGUGcuCGCGc -3'
miRNA:   3'- -CG-CGCCG----ACU-------UAGGCGCGCuuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 58984 0.67 0.621507
Target:  5'- cGCGcCGGC-GAAaCCaGCGCu-ACGCGGc -3'
miRNA:   3'- -CGC-GCCGaCUUaGG-CGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4897 0.67 0.621507
Target:  5'- cGC-CGGcCUGA--UCGCGC-AGCGCGGc -3'
miRNA:   3'- -CGcGCC-GACUuaGGCGCGcUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8053 0.67 0.642678
Target:  5'- aGCGCGcGU----UCUGgGUGAGCGUGGg -3'
miRNA:   3'- -CGCGC-CGacuuAGGCgCGCUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.