Results 81 - 100 of 169 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 28163 | 0.68 | 0.537802 |
Target: 5'- cGCGCGGCgcaa-CUGCGCGcg-GCGGc -3' miRNA: 3'- -CGCGCCGacuuaGGCGCGCuugCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 14314 | 0.68 | 0.5481 |
Target: 5'- aGgGCGGCgGAA-CCGC-CGAGCuggGCGGc -3' miRNA: 3'- -CgCGCCGaCUUaGGCGcGCUUG---CGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 17345 | 0.68 | 0.5481 |
Target: 5'- uCGCGGC--GAUCCGCGagaaGAucgACGCGa -3' miRNA: 3'- cGCGCCGacUUAGGCGCg---CU---UGCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 49231 | 0.68 | 0.5481 |
Target: 5'- -gGCGGCgcgcAGUCCGCGCGcgaggucCGCGa -3' miRNA: 3'- cgCGCCGac--UUAGGCGCGCuu-----GCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 27558 | 0.68 | 0.558459 |
Target: 5'- aGCccCGGCgagGAcgCCGCGC-AGCGCGa -3' miRNA: 3'- -CGc-GCCGa--CUuaGGCGCGcUUGCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 31369 | 0.69 | 0.477628 |
Target: 5'- uGC-CGGCgaUGAAaCCGgcaGCGAugGCGGg -3' miRNA: 3'- -CGcGCCG--ACUUaGGCg--CGCUugCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 15632 | 0.69 | 0.517415 |
Target: 5'- gGCGCGGCUGAa--CGCGuCGGGCa--- -3' miRNA: 3'- -CGCGCCGACUuagGCGC-GCUUGcgcc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 24752 | 0.69 | 0.505331 |
Target: 5'- cGUGCGGCcGAAguggauucagcaCCGCgGCGAGC-CGGg -3' miRNA: 3'- -CGCGCCGaCUUa-----------GGCG-CGCUUGcGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 12418 | 0.69 | 0.477628 |
Target: 5'- gGCGCGGCcuuggCCGgcguCGCGGacgGCGCGGu -3' miRNA: 3'- -CGCGCCGacuuaGGC----GCGCU---UGCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 36871 | 0.69 | 0.477628 |
Target: 5'- -gGCGGC-GAAUCCGgcuCGgGAucgucGCGCGGa -3' miRNA: 3'- cgCGCCGaCUUAGGC---GCgCU-----UGCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 35639 | 0.69 | 0.487438 |
Target: 5'- cGCGCaGUUGcg-CCGCGCGcuCGgGGa -3' miRNA: 3'- -CGCGcCGACuuaGGCGCGCuuGCgCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 33132 | 0.69 | 0.507336 |
Target: 5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3' miRNA: 3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 5591 | 0.69 | 0.517415 |
Target: 5'- cGgGCGGCgccgcucUCCGCagGCGA-CGCGGa -3' miRNA: 3'- -CgCGCCGacuu---AGGCG--CGCUuGCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 21533 | 0.69 | 0.517415 |
Target: 5'- cGUGCcGCUcGucgCCGCaGUGAGCGCGGc -3' miRNA: 3'- -CGCGcCGA-CuuaGGCG-CGCUUGCGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 15880 | 0.69 | 0.487438 |
Target: 5'- aCGCGauggcGCUGAuccgCCGCGUGcGCGCGa -3' miRNA: 3'- cGCGC-----CGACUua--GGCGCGCuUGCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 43693 | 0.69 | 0.487438 |
Target: 5'- cCG-GGCcGAAUUCGCGCGGcgACGCGc -3' miRNA: 3'- cGCgCCGaCUUAGGCGCGCU--UGCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 35390 | 0.69 | 0.497343 |
Target: 5'- aCGCGGCgcucAAUaCCGCGCGcACGCu- -3' miRNA: 3'- cGCGCCGac--UUA-GGCGCGCuUGCGcc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 44988 | 0.69 | 0.497343 |
Target: 5'- cGUGCaGC--AGUCCGCGCGGcagGCgGCGGa -3' miRNA: 3'- -CGCGcCGacUUAGGCGCGCU---UG-CGCC- -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 57938 | 0.69 | 0.497343 |
Target: 5'- uCGCGGCauucaacgUGGAgg-GCGCGAGCGCGc -3' miRNA: 3'- cGCGCCG--------ACUUaggCGCGCUUGCGCc -5' |
|||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 15766 | 0.69 | 0.473731 |
Target: 5'- gGCGCGGCcGGcugCUGCGUGGucuggguguugguCGCGGg -3' miRNA: 3'- -CGCGCCGaCUua-GGCGCGCUu------------GCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home