miRNA display CGI


Results 21 - 40 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 41578 0.73 0.298716
Target:  5'- gGCGCGGCcgUGAgcuuGUCgaGCGCGAGCcCGGc -3'
miRNA:   3'- -CGCGCCG--ACU----UAGg-CGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 63722 0.73 0.284659
Target:  5'- gGCGCGGCcGAcuUCUuCGCGAGcCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUu-AGGcGCGCUU-GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 23535 0.73 0.301591
Target:  5'- aGCGCGGgaGGA-CCGCGCagacuGAccaaccgcccgccgcGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaGGCGCG-----CU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12184 0.73 0.313305
Target:  5'- uGCGCGGCaGGAgcaaaUCGCGCaGAugGCGa -3'
miRNA:   3'- -CGCGCCGaCUUa----GGCGCG-CUugCGCc -5'
23936 3' -57.4 NC_005262.1 + 53101 0.72 0.344082
Target:  5'- cGCGCGGCcucGAUCUGCGCaugcaGGAUGCGu -3'
miRNA:   3'- -CGCGCCGac-UUAGGCGCG-----CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 19886 0.72 0.352109
Target:  5'- cCGCGGUUGGcgCCGCGCuGAcCGCc- -3'
miRNA:   3'- cGCGCCGACUuaGGCGCG-CUuGCGcc -5'
23936 3' -57.4 NC_005262.1 + 53013 0.72 0.360267
Target:  5'- cGCGCaGCaGua-CCGCGCGcccGGCGCGGg -3'
miRNA:   3'- -CGCGcCGaCuuaGGCGCGC---UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 21822 0.72 0.360267
Target:  5'- uGCGCGGCgguGUCaggcaacagGCGCGGcacaagGCGCGGg -3'
miRNA:   3'- -CGCGCCGacuUAGg--------CGCGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52400 0.72 0.320799
Target:  5'- gGCGCGGCUucggcgugGAGcCgCGCGCGAACGUc- -3'
miRNA:   3'- -CGCGCCGA--------CUUaG-GCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 22364 0.72 0.320799
Target:  5'- cGCGUGGUgcgGAggguGUCCgGCGCGGAuCGCGa -3'
miRNA:   3'- -CGCGCCGa--CU----UAGG-CGCGCUU-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 21685 0.72 0.328427
Target:  5'- -aGCGGC-GGcgCCGCGCugcuguACGCGGg -3'
miRNA:   3'- cgCGCCGaCUuaGGCGCGcu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 34496 0.72 0.3513
Target:  5'- cGCGCGGCgg----CGCGCGAcuucugcgagacgACGCGGc -3'
miRNA:   3'- -CGCGCCGacuuagGCGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 5160 0.72 0.347277
Target:  5'- gGCGC-GCUGAucggugacggccggcGUCgcggGCGCGGGCGCGGc -3'
miRNA:   3'- -CGCGcCGACU---------------UAGg---CGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4559 0.72 0.344082
Target:  5'- cGCGCGGCgc-AUCuCGCGCcAGCgGCGGc -3'
miRNA:   3'- -CGCGCCGacuUAG-GCGCGcUUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 54198 0.72 0.336188
Target:  5'- aGCGCGuGCUccagcgcCCGCGCGAGC-CGGa -3'
miRNA:   3'- -CGCGC-CGAcuua---GGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 11394 0.72 0.335406
Target:  5'- cGCGCGGCUccacgccGAAgCCGCGCc-GCGcCGGg -3'
miRNA:   3'- -CGCGCCGA-------CUUaGGCGCGcuUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 50282 0.72 0.328427
Target:  5'- cGCGcCGGCcGAGcCCGUGaCGGccGCGCGGa -3'
miRNA:   3'- -CGC-GCCGaCUUaGGCGC-GCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 6883 0.72 0.320799
Target:  5'- aGCGCGGCcuUGAucucgCCG-GCGAGCGUGu -3'
miRNA:   3'- -CGCGCCG--ACUua---GGCgCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 243 0.72 0.320799
Target:  5'- gGCgGCGGCgGGAcauUUCGCGCGGACGUa- -3'
miRNA:   3'- -CG-CGCCGaCUU---AGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 15143 0.72 0.352109
Target:  5'- uCGCGGCcggcgucGAGUCgGCGCGGAUGuUGGa -3'
miRNA:   3'- cGCGCCGa------CUUAGgCGCGCUUGC-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.