Results 41 - 60 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 50282 | 0.72 | 0.328427 |
Target: 5'- cGCGcCGGCcGAGcCCGUGaCGGccGCGCGGa -3' miRNA: 3'- -CGC-GCCGaCUUaGGCGC-GCU--UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 22364 | 0.72 | 0.320799 |
Target: 5'- cGCGUGGUgcgGAggguGUCCgGCGCGGAuCGCGa -3' miRNA: 3'- -CGCGCCGa--CU----UAGG-CGCGCUU-GCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 32867 | 0.72 | 0.320799 |
Target: 5'- cGUGCGGCgccGAGcuguucgCCGCGuCGAACGuCGGc -3' miRNA: 3'- -CGCGCCGa--CUUa------GGCGC-GCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 48466 | 0.72 | 0.360267 |
Target: 5'- cGCGCGGaucgcGAG-CCGCGUGGGCaCGGg -3' miRNA: 3'- -CGCGCCga---CUUaGGCGCGCUUGcGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 40867 | 0.72 | 0.336188 |
Target: 5'- cGCGCGGagcaUGGcgUCG-GCGAGCGCGu -3' miRNA: 3'- -CGCGCCg---ACUuaGGCgCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35199 | 0.71 | 0.368556 |
Target: 5'- cGCGUGGCcagccuacGUCCGCaaGGAUGCGGa -3' miRNA: 3'- -CGCGCCGacu-----UAGGCGcgCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 26534 | 0.71 | 0.376975 |
Target: 5'- aCGUGGCUcGGccguuGUUCGUGCGGuucACGCGGa -3' miRNA: 3'- cGCGCCGA-CU-----UAGGCGCGCU---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 14436 | 0.71 | 0.411922 |
Target: 5'- cGCGCGucGCcGAGUCgucaGCGAGCGCGGc -3' miRNA: 3'- -CGCGC--CGaCUUAGgcg-CGCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 40243 | 0.71 | 0.402113 |
Target: 5'- cGCGCGGCgGGcgguuggucaGUCUGCGCGGuccucccGCGCu- -3' miRNA: 3'- -CGCGCCGaCU----------UAGGCGCGCU-------UGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 52845 | 0.71 | 0.402998 |
Target: 5'- aGCGCGaaUGccugCUGCGCGuAGCGCGGc -3' miRNA: 3'- -CGCGCcgACuua-GGCGCGC-UUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 43858 | 0.71 | 0.411922 |
Target: 5'- uGCGcCGGCaGGAccUCgGCGCGAucGCGCGc -3' miRNA: 3'- -CGC-GCCGaCUU--AGgCGCGCU--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 43750 | 0.71 | 0.402113 |
Target: 5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3' miRNA: 3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 58884 | 0.71 | 0.376975 |
Target: 5'- cGCGCguuGGCUGcugCCGCGCu-GCGCGa -3' miRNA: 3'- -CGCG---CCGACuuaGGCGCGcuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 51192 | 0.71 | 0.376128 |
Target: 5'- aCGCGGCggcccgcUGGAgCCGCGCGGGCGauGc -3' miRNA: 3'- cGCGCCG-------ACUUaGGCGCGCUUGCgcC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 40484 | 0.7 | 0.420967 |
Target: 5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3' miRNA: 3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 44140 | 0.7 | 0.467916 |
Target: 5'- cGCGUuccGGCcgGAcgCgCGCGCGAucgggcaggaGCGCGGc -3' miRNA: 3'- -CGCG---CCGa-CUuaG-GCGCGCU----------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 56943 | 0.7 | 0.467916 |
Target: 5'- aGCGCacGCcG-AUCCGCGCGGGCgaguucGCGGg -3' miRNA: 3'- -CGCGc-CGaCuUAGGCGCGCUUG------CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 18160 | 0.7 | 0.458306 |
Target: 5'- aGCGCGuGCccgccUGA--UCGCGCGAGCGCc- -3' miRNA: 3'- -CGCGC-CG-----ACUuaGGCGCGCUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 60851 | 0.7 | 0.43013 |
Target: 5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3' miRNA: 3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 23009 | 0.7 | 0.457351 |
Target: 5'- cGUGCGGCaUGAAugcggcuUCCGCGUGGaguucaucgACGCa- -3' miRNA: 3'- -CGCGCCG-ACUU-------AGGCGCGCU---------UGCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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