miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 18160 0.7 0.458306
Target:  5'- aGCGCGuGCccgccUGA--UCGCGCGAGCGCc- -3'
miRNA:   3'- -CGCGC-CG-----ACUuaGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 23009 0.7 0.457351
Target:  5'- cGUGCGGCaUGAAugcggcuUCCGCGUGGaguucaucgACGCa- -3'
miRNA:   3'- -CGCGCCG-ACUU-------AGGCGCGCU---------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 22480 0.7 0.43941
Target:  5'- aGCGCGaagcGCUGAAgcuggCGCGCGAGCggaucgcgaaGCGGc -3'
miRNA:   3'- -CGCGC----CGACUUag---GCGCGCUUG----------CGCC- -5'
23936 3' -57.4 NC_005262.1 + 60851 0.7 0.43013
Target:  5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3'
miRNA:   3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 45272 0.7 0.43013
Target:  5'- aGCGuCGaacGC-GAAcuUCCGCGCGAACGuCGGc -3'
miRNA:   3'- -CGC-GC---CGaCUU--AGGCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 35241 0.7 0.43941
Target:  5'- cGCGCGGCgGAAgCCccagauagGCGUGAACG-GGu -3'
miRNA:   3'- -CGCGCCGaCUUaGG--------CGCGCUUGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 1378 0.7 0.445974
Target:  5'- cCGCGGUUGcguuacauaaccacAAUCCGCggGCGGGCGCu- -3'
miRNA:   3'- cGCGCCGAC--------------UUAGGCG--CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 52782 0.7 0.467916
Target:  5'- uGCGCGacagccgccucGCUcGucagCCGUGCGAGCGCGa -3'
miRNA:   3'- -CGCGC-----------CGA-Cuua-GGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 51673 0.7 0.420967
Target:  5'- aGCGCGGC-GAucugCuCGCGCGcACgGCGGc -3'
miRNA:   3'- -CGCGCCGaCUua--G-GCGCGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 12418 0.69 0.477628
Target:  5'- gGCGCGGCcuuggCCGgcguCGCGGacgGCGCGGu -3'
miRNA:   3'- -CGCGCCGacuuaGGC----GCGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 24752 0.69 0.505331
Target:  5'- cGUGCGGCcGAAguggauucagcaCCGCgGCGAGC-CGGg -3'
miRNA:   3'- -CGCGCCGaCUUa-----------GGCG-CGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 15632 0.69 0.517415
Target:  5'- gGCGCGGCUGAa--CGCGuCGGGCa--- -3'
miRNA:   3'- -CGCGCCGACUuagGCGC-GCUUGcgcc -5'
23936 3' -57.4 NC_005262.1 + 35390 0.69 0.497343
Target:  5'- aCGCGGCgcucAAUaCCGCGCGcACGCu- -3'
miRNA:   3'- cGCGCCGac--UUA-GGCGCGCuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 33132 0.69 0.507336
Target:  5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3'
miRNA:   3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 31369 0.69 0.477628
Target:  5'- uGC-CGGCgaUGAAaCCGgcaGCGAugGCGGg -3'
miRNA:   3'- -CGcGCCG--ACUUaGGCg--CGCUugCGCC- -5'
23936 3' -57.4 NC_005262.1 + 35639 0.69 0.487438
Target:  5'- cGCGCaGUUGcg-CCGCGCGcuCGgGGa -3'
miRNA:   3'- -CGCGcCGACuuaGGCGCGCuuGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 5591 0.69 0.517415
Target:  5'- cGgGCGGCgccgcucUCCGCagGCGA-CGCGGa -3'
miRNA:   3'- -CgCGCCGacuu---AGGCG--CGCUuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43693 0.69 0.487438
Target:  5'- cCG-GGCcGAAUUCGCGCGGcgACGCGc -3'
miRNA:   3'- cGCgCCGaCUUAGGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 15766 0.69 0.473731
Target:  5'- gGCGCGGCcGGcugCUGCGUGGucuggguguugguCGCGGg -3'
miRNA:   3'- -CGCGCCGaCUua-GGCGCGCUu------------GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 57938 0.69 0.497343
Target:  5'- uCGCGGCauucaacgUGGAgg-GCGCGAGCGCGc -3'
miRNA:   3'- cGCGCCG--------ACUUaggCGCGCUUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.