miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 23397 1.12 0.000614
Target:  5'- cGCGCGGCUGAAUCCGCGCGAACGCGGc -3'
miRNA:   3'- -CGCGCCGACUUAGGCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17343 0.83 0.070293
Target:  5'- gGCGCGGCauucGggUCCgGCGCGGgcgGCGCGGc -3'
miRNA:   3'- -CGCGCCGa---CuuAGG-CGCGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 22526 0.81 0.097826
Target:  5'- cGCGCGGCcGAAUCUGCGUGAuCGCc- -3'
miRNA:   3'- -CGCGCCGaCUUAGGCGCGCUuGCGcc -5'
23936 3' -57.4 NC_005262.1 + 34123 0.8 0.106162
Target:  5'- cGCG-GGUUGGGcgggCUGCGCGGGCGCGGg -3'
miRNA:   3'- -CGCgCCGACUUa---GGCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52318 0.8 0.109086
Target:  5'- aCGCGGCccaUGugcUCgCGCGCGAGCGCGGu -3'
miRNA:   3'- cGCGCCG---ACuu-AG-GCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 15334 0.79 0.121553
Target:  5'- aCGCGGCUcgcGAUCCGCGCGGcauACGCGc -3'
miRNA:   3'- cGCGCCGAc--UUAGGCGCGCU---UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 41390 0.77 0.171716
Target:  5'- -gGCGGCgcucGAUCaGUGCGAACGCGGg -3'
miRNA:   3'- cgCGCCGac--UUAGgCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 19102 0.75 0.226688
Target:  5'- cGCGCGGCgaugccacguucGGAUCgGgCGCGGGCGCGu -3'
miRNA:   3'- -CGCGCCGa-----------CUUAGgC-GCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 50403 0.75 0.227835
Target:  5'- cGCGCGGC-GAucagcgCCGCG-GAGCGCGa -3'
miRNA:   3'- -CGCGCCGaCUua----GGCGCgCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 13803 0.74 0.245629
Target:  5'- gGCGCGGCUucAUCgGCGgGAGCG-GGc -3'
miRNA:   3'- -CGCGCCGAcuUAGgCGCgCUUGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 43000 0.74 0.251812
Target:  5'- uCGCGGCUGcucgauauggaaGAUgCGCGCGuGCGCGa -3'
miRNA:   3'- cGCGCCGAC------------UUAgGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 47896 0.74 0.251812
Target:  5'- uCGCGGCgcacgUCGCGCGcACGCGGc -3'
miRNA:   3'- cGCGCCGacuuaGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4786 0.74 0.258122
Target:  5'- cCGCGGCUugcaGAcgGUCgaaGCGCGAcgGCGCGGg -3'
miRNA:   3'- cGCGCCGA----CU--UAGg--CGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17258 0.74 0.264561
Target:  5'- aGCgGCGGCcGGcgCCGCGCuGGgcugcuGCGCGGg -3'
miRNA:   3'- -CG-CGCCGaCUuaGGCGCG-CU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13694 0.74 0.277829
Target:  5'- gGC-CGGCUucuGUUCGCGCG-GCGCGGg -3'
miRNA:   3'- -CGcGCCGAcu-UAGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52835 0.74 0.277829
Target:  5'- -aGCGGCUGAAggCUGCGCucACGCa- -3'
miRNA:   3'- cgCGCCGACUUa-GGCGCGcuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 63722 0.73 0.284659
Target:  5'- gGCGCGGCcGAcuUCUuCGCGAGcCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUu-AGGcGCGCUU-GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 46248 0.73 0.291621
Target:  5'- cCGCGGCUGccgccUCgCGCGCGAcCGCGu -3'
miRNA:   3'- cGCGCCGACuu---AG-GCGCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 13396 0.73 0.298716
Target:  5'- cCGCGGCgcUGAucgCCGCGCGGuuCGCGu -3'
miRNA:   3'- cGCGCCG--ACUua-GGCGCGCUu-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 41578 0.73 0.298716
Target:  5'- gGCGCGGCcgUGAgcuuGUCgaGCGCGAGCcCGGc -3'
miRNA:   3'- -CGCGCCG--ACU----UAGg-CGCGCUUGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.