miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 10699 0.72 0.360267
Target:  5'- uGCGCaGaucGAggCCGCGCGcACGCGGc -3'
miRNA:   3'- -CGCGcCga-CUuaGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 48466 0.72 0.360267
Target:  5'- cGCGCGGaucgcGAG-CCGCGUGGGCaCGGg -3'
miRNA:   3'- -CGCGCCga---CUUaGGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 21822 0.72 0.360267
Target:  5'- uGCGCGGCgguGUCaggcaacagGCGCGGcacaagGCGCGGg -3'
miRNA:   3'- -CGCGCCGacuUAGg--------CGCGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 53013 0.72 0.360267
Target:  5'- cGCGCaGCaGua-CCGCGCGcccGGCGCGGg -3'
miRNA:   3'- -CGCGcCGaCuuaGGCGCGC---UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13509 0.72 0.363567
Target:  5'- cGCGCGGCcGucacgggcucggCCgGCGCGGGCGCGc -3'
miRNA:   3'- -CGCGCCGaCuua---------GG-CGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 35199 0.71 0.368556
Target:  5'- cGCGUGGCcagccuacGUCCGCaaGGAUGCGGa -3'
miRNA:   3'- -CGCGCCGacu-----UAGGCGcgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51192 0.71 0.376128
Target:  5'- aCGCGGCggcccgcUGGAgCCGCGCGGGCGauGc -3'
miRNA:   3'- cGCGCCG-------ACUUaGGCGCGCUUGCgcC- -5'
23936 3' -57.4 NC_005262.1 + 58884 0.71 0.376975
Target:  5'- cGCGCguuGGCUGcugCCGCGCu-GCGCGa -3'
miRNA:   3'- -CGCG---CCGACuuaGGCGCGcuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 26534 0.71 0.376975
Target:  5'- aCGUGGCUcGGccguuGUUCGUGCGGuucACGCGGa -3'
miRNA:   3'- cGCGCCGA-CU-----UAGGCGCGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43750 0.71 0.402113
Target:  5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3'
miRNA:   3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 40243 0.71 0.402113
Target:  5'- cGCGCGGCgGGcgguuggucaGUCUGCGCGGuccucccGCGCu- -3'
miRNA:   3'- -CGCGCCGaCU----------UAGGCGCGCU-------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 52845 0.71 0.402998
Target:  5'- aGCGCGaaUGccugCUGCGCGuAGCGCGGc -3'
miRNA:   3'- -CGCGCcgACuua-GGCGCGC-UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43858 0.71 0.411922
Target:  5'- uGCGcCGGCaGGAccUCgGCGCGAucGCGCGc -3'
miRNA:   3'- -CGC-GCCGaCUU--AGgCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 14436 0.71 0.411922
Target:  5'- cGCGCGucGCcGAGUCgucaGCGAGCGCGGc -3'
miRNA:   3'- -CGCGC--CGaCUUAGgcg-CGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 18680 0.7 0.420057
Target:  5'- cGCGCGGU---GUUCGCGgcacccgccgaguUGAGCGCGGu -3'
miRNA:   3'- -CGCGCCGacuUAGGCGC-------------GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51673 0.7 0.420967
Target:  5'- aGCGCGGC-GAucugCuCGCGCGcACgGCGGc -3'
miRNA:   3'- -CGCGCCGaCUua--G-GCGCGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 40484 0.7 0.420967
Target:  5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3'
miRNA:   3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 45272 0.7 0.43013
Target:  5'- aGCGuCGaacGC-GAAcuUCCGCGCGAACGuCGGc -3'
miRNA:   3'- -CGC-GC---CGaCUU--AGGCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 60851 0.7 0.43013
Target:  5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3'
miRNA:   3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 35241 0.7 0.43941
Target:  5'- cGCGCGGCgGAAgCCccagauagGCGUGAACG-GGu -3'
miRNA:   3'- -CGCGCCGaCUUaGG--------CGCGCUUGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.