Results 81 - 100 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 33132 | 0.69 | 0.507336 |
Target: 5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3' miRNA: 3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 5591 | 0.69 | 0.517415 |
Target: 5'- cGgGCGGCgccgcucUCCGCagGCGA-CGCGGa -3' miRNA: 3'- -CgCGCCGacuu---AGGCG--CGCUuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 21533 | 0.69 | 0.517415 |
Target: 5'- cGUGCcGCUcGucgCCGCaGUGAGCGCGGc -3' miRNA: 3'- -CGCGcCGA-CuuaGGCG-CGCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 15632 | 0.69 | 0.517415 |
Target: 5'- gGCGCGGCUGAa--CGCGuCGGGCa--- -3' miRNA: 3'- -CGCGCCGACUuagGCGC-GCUUGcgcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 60509 | 0.68 | 0.527572 |
Target: 5'- cGCGCGGCgcaggCCGCcaaGAGCGUGa -3' miRNA: 3'- -CGCGCCGacuuaGGCGcg-CUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 38230 | 0.68 | 0.527572 |
Target: 5'- gGCGCagacGGCUGccGUCUGguUGgGAGCGCGGa -3' miRNA: 3'- -CGCG----CCGACu-UAGGC--GCgCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 10789 | 0.68 | 0.527572 |
Target: 5'- cGCGCGGUacug-CUGCGCGAGCugccGCGa -3' miRNA: 3'- -CGCGCCGacuuaGGCGCGCUUG----CGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 38431 | 0.68 | 0.527572 |
Target: 5'- gGCGCGGUcGAgAUCaCGC-CGGACGaCGGc -3' miRNA: 3'- -CGCGCCGaCU-UAG-GCGcGCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 12485 | 0.68 | 0.531656 |
Target: 5'- cGCGCGGCauacgcagUGAgcgaaaccgcgcuucAgaugCCGCGCG-ACGCGa -3' miRNA: 3'- -CGCGCCG--------ACU---------------Ua---GGCGCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 33969 | 0.68 | 0.534726 |
Target: 5'- aCGCGGCgucgagcugcugGAcgUCGUGCGuaacaugGGCGCGGa -3' miRNA: 3'- cGCGCCGa-----------CUuaGGCGCGC-------UUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 28163 | 0.68 | 0.537802 |
Target: 5'- cGCGCGGCgcaa-CUGCGCGcg-GCGGc -3' miRNA: 3'- -CGCGCCGacuuaGGCGCGCuugCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 34985 | 0.68 | 0.537802 |
Target: 5'- aCGCGaGCUcGAga-UGCGCGGGCGCGa -3' miRNA: 3'- cGCGC-CGA-CUuagGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 3844 | 0.68 | 0.537802 |
Target: 5'- aGCG-GGC-GAAUCUGCuucGCGAGCGCc- -3' miRNA: 3'- -CGCgCCGaCUUAGGCG---CGCUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 19656 | 0.68 | 0.537802 |
Target: 5'- cGCGCGcGC---GUCCG-GCcgGAACGCGGg -3' miRNA: 3'- -CGCGC-CGacuUAGGCgCG--CUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 49231 | 0.68 | 0.5481 |
Target: 5'- -gGCGGCgcgcAGUCCGCGCGcgaggucCGCGa -3' miRNA: 3'- cgCGCCGac--UUAGGCGCGCuu-----GCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 14024 | 0.68 | 0.5481 |
Target: 5'- gGCGCGGCaGcggCCGgaGCcucGGGCGCGGg -3' miRNA: 3'- -CGCGCCGaCuuaGGCg-CG---CUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17109 | 0.68 | 0.5481 |
Target: 5'- cGCGCGGCgcUGA--CUGCaucgGCGGGCGuCGGu -3' miRNA: 3'- -CGCGCCG--ACUuaGGCG----CGCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 14314 | 0.68 | 0.5481 |
Target: 5'- aGgGCGGCgGAA-CCGC-CGAGCuggGCGGc -3' miRNA: 3'- -CgCGCCGaCUUaGGCGcGCUUG---CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17345 | 0.68 | 0.5481 |
Target: 5'- uCGCGGC--GAUCCGCGagaaGAucgACGCGa -3' miRNA: 3'- cGCGCCGacUUAGGCGCg---CU---UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 44711 | 0.68 | 0.5481 |
Target: 5'- gGCGUGGCUGcaucAGUUCaaG-GAGCGCGGc -3' miRNA: 3'- -CGCGCCGAC----UUAGGcgCgCUUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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