Results 1 - 20 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 14329 | 0.66 | 0.706712 |
Target: 5'- uGCGCGcuucagcgugcucuuGCUGAccuucucggucacgAUCUuCGCGAguGCGCGGu -3' miRNA: 3'- -CGCGC---------------CGACU--------------UAGGcGCGCU--UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17096 | 0.66 | 0.705676 |
Target: 5'- aCGCGGCggg--CCGCGagGAgguccaccGCGCGGc -3' miRNA: 3'- cGCGCCGacuuaGGCGCg-CU--------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 29309 | 0.66 | 0.705676 |
Target: 5'- cGCGCGcCg----CCGCGCGGAUGUGc -3' miRNA: 3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 12323 | 0.66 | 0.705676 |
Target: 5'- aUGCGGCUcgugCCGCaGCGcGCgGCGGc -3' miRNA: 3'- cGCGCCGAcuuaGGCG-CGCuUG-CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 63540 | 0.66 | 0.702566 |
Target: 5'- aGCGCGuGUac-GUCCGCGCGAaaugucccgccgccGCcgGCGGu -3' miRNA: 3'- -CGCGC-CGacuUAGGCGCGCU--------------UG--CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 30893 | 0.66 | 0.699449 |
Target: 5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3' miRNA: 3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35567 | 0.66 | 0.695285 |
Target: 5'- gGCGCGG--GAAagaGCGCGAauguugugcucgGCGCGGg -3' miRNA: 3'- -CGCGCCgaCUUaggCGCGCU------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 18790 | 0.66 | 0.695285 |
Target: 5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3' miRNA: 3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 56907 | 0.66 | 0.695285 |
Target: 5'- aCGCGGCUcGAAaaCGCGau--CGCGGc -3' miRNA: 3'- cGCGCCGA-CUUagGCGCgcuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 12821 | 0.66 | 0.695285 |
Target: 5'- gGCGCGuGaaGAAggaGCGCGGccuCGCGGg -3' miRNA: 3'- -CGCGC-CgaCUUaggCGCGCUu--GCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 48411 | 0.66 | 0.695285 |
Target: 5'- aGCGCGGCgaAAUCCcgaacaCGaCGGACgGCGGc -3' miRNA: 3'- -CGCGCCGacUUAGGc-----GC-GCUUG-CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17490 | 0.66 | 0.695285 |
Target: 5'- aGCGC-GCg----CCGCGCGcGACGCGu -3' miRNA: 3'- -CGCGcCGacuuaGGCGCGC-UUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 10214 | 0.66 | 0.684838 |
Target: 5'- uGCGCGGUacaUGcugccGGUCaGCGCGuGCGCGc -3' miRNA: 3'- -CGCGCCG---AC-----UUAGgCGCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17186 | 0.66 | 0.684838 |
Target: 5'- cGCGUcgGGCgGGAUCUGUGgCGucUGCGGc -3' miRNA: 3'- -CGCG--CCGaCUUAGGCGC-GCuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 51333 | 0.66 | 0.684838 |
Target: 5'- cGCGCGGCaagaucGAAUCCGCcauGC-AGCuCGGc -3' miRNA: 3'- -CGCGCCGa-----CUUAGGCG---CGcUUGcGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 11550 | 0.66 | 0.684838 |
Target: 5'- cGC-CGGCUGAagugcAUCaCGCGCGcugcuaugccGGCgGCGGc -3' miRNA: 3'- -CGcGCCGACU-----UAG-GCGCGC----------UUG-CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 54989 | 0.66 | 0.68379 |
Target: 5'- gGCGCGGCauucagGAAggcgacauguaccUCgCGCacGCGGucgGCGCGGg -3' miRNA: 3'- -CGCGCCGa-----CUU-------------AG-GCG--CGCU---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 28697 | 0.66 | 0.678546 |
Target: 5'- gGCGCGGUcGAcgauaucgacgaguUCCGcCGCGAggccGCGCGc -3' miRNA: 3'- -CGCGCCGaCUu-------------AGGC-GCGCU----UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 8646 | 0.66 | 0.675395 |
Target: 5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3' miRNA: 3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17608 | 0.66 | 0.674344 |
Target: 5'- cGCGCGgaGCUGGAgcgCCagcaGCGCGAGCuCGc -3' miRNA: 3'- -CGCGC--CGACUUa--GG----CGCGCUUGcGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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