miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 17608 0.66 0.674344
Target:  5'- cGCGCGgaGCUGGAgcgCCagcaGCGCGAGCuCGc -3'
miRNA:   3'- -CGCGC--CGACUUa--GG----CGCGCUUGcGCc -5'
23936 3' -57.4 NC_005262.1 + 23138 0.66 0.674344
Target:  5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3'
miRNA:   3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 39601 0.66 0.674344
Target:  5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3'
miRNA:   3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 52968 0.66 0.674344
Target:  5'- aGCGCGGCgGA---CGCGCauGCGCuGGu -3'
miRNA:   3'- -CGCGCCGaCUuagGCGCGcuUGCG-CC- -5'
23936 3' -57.4 NC_005262.1 + 27778 0.66 0.673292
Target:  5'- aCGCGGCacGAUgaugcgacggcacUCGCGCGGcACGUGGa -3'
miRNA:   3'- cGCGCCGacUUA-------------GGCGCGCU-UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 38546 0.66 0.663813
Target:  5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3'
miRNA:   3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4504 0.66 0.663813
Target:  5'- cGUcCGGCaUGuccucguuGAUCCGCGCG-ACGCGc -3'
miRNA:   3'- -CGcGCCG-AC--------UUAGGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 46732 0.66 0.663813
Target:  5'- cGCGCcuaucGGCgccGUgCGCGCGAcgagcuCGCGGa -3'
miRNA:   3'- -CGCG-----CCGacuUAgGCGCGCUu-----GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 29885 0.66 0.663813
Target:  5'- cGCGCGGCgcuucaggaagaUGAcgGUUCGgGCG-AUGCGa -3'
miRNA:   3'- -CGCGCCG------------ACU--UAGGCgCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 41971 0.66 0.653254
Target:  5'- cGCGCcuguuGcCUGAcaccgCCGCGCaGAACGCGa -3'
miRNA:   3'- -CGCGc----C-GACUua---GGCGCG-CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 1397 0.66 0.653254
Target:  5'- uCGCGGCccuugcgcUGAugAUCCGCcaCGAcCGCGGc -3'
miRNA:   3'- cGCGCCG--------ACU--UAGGCGc-GCUuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 32036 0.67 0.642678
Target:  5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3'
miRNA:   3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 50422 0.67 0.642678
Target:  5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3'
miRNA:   3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 55759 0.67 0.642678
Target:  5'- aCGCGcGCUGcgucAGUCCuGaCGCGAGC-CGGa -3'
miRNA:   3'- cGCGC-CGAC----UUAGG-C-GCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 3733 0.67 0.642678
Target:  5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 58242 0.67 0.642678
Target:  5'- uGCGUGGUgacGAUCCGCGCaucGAGCaCGa -3'
miRNA:   3'- -CGCGCCGac-UUAGGCGCG---CUUGcGCc -5'
23936 3' -57.4 NC_005262.1 + 41163 0.67 0.642678
Target:  5'- aGCGCGcGCagGAGggcaCCGcCGCGAuCGCGu -3'
miRNA:   3'- -CGCGC-CGa-CUUa---GGC-GCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 8053 0.67 0.642678
Target:  5'- aGCGCGcGU----UCUGgGUGAGCGUGGg -3'
miRNA:   3'- -CGCGC-CGacuuAGGCgCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4659 0.67 0.641619
Target:  5'- cGCGCGGC-GAcgCgGCcCGGccgguucgccucgGCGCGGu -3'
miRNA:   3'- -CGCGCCGaCUuaGgCGcGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 16619 0.67 0.638444
Target:  5'- cGCGUuucGaGCUGGGcgauaucgucgugCUGCGCGAgcACGCGGa -3'
miRNA:   3'- -CGCG---C-CGACUUa------------GGCGCGCU--UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.