miRNA display CGI


Results 41 - 60 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 12223 0.67 0.638444
Target:  5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3'
miRNA:   3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8194 0.67 0.632092
Target:  5'- cGC-CGGaaGGcgCCGCaGCGAugauccGCGCGGg -3'
miRNA:   3'- -CGcGCCgaCUuaGGCG-CGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13129 0.67 0.632092
Target:  5'- cCGUGGCacaauuaGGuccgCCGCGCGcgcuGCGCGGc -3'
miRNA:   3'- cGCGCCGa------CUua--GGCGCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 57665 0.67 0.632092
Target:  5'- -gGCGGCacGAUCgacuucucgCGCGcCGGGCGCGGc -3'
miRNA:   3'- cgCGCCGacUUAG---------GCGC-GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13362 0.67 0.632092
Target:  5'- aGCGCuGCgccagcacgGAAUCCuGCGCcuGGGCGCGc -3'
miRNA:   3'- -CGCGcCGa--------CUUAGG-CGCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 47132 0.67 0.631034
Target:  5'- gGCuGCGGCcacuUGAacuugucGUCCGCGUGcuCGCGc -3'
miRNA:   3'- -CG-CGCCG----ACU-------UAGGCGCGCuuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 4897 0.67 0.621507
Target:  5'- cGC-CGGcCUGA--UCGCGC-AGCGCGGc -3'
miRNA:   3'- -CGcGCC-GACUuaGGCGCGcUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 58984 0.67 0.621507
Target:  5'- cGCGcCGGC-GAAaCCaGCGCu-ACGCGGc -3'
miRNA:   3'- -CGC-GCCGaCUUaGG-CGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 55625 0.67 0.61093
Target:  5'- uGCGCaGCaaGAAgccgggCCGCGCGcuCGUGGc -3'
miRNA:   3'- -CGCGcCGa-CUUa-----GGCGCGCuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 39914 0.67 0.61093
Target:  5'- cGUGCGGgUGAcacaauacGUgUGCGCc-GCGCGGg -3'
miRNA:   3'- -CGCGCCgACU--------UAgGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 40382 0.67 0.61093
Target:  5'- uCGaCGGcCUGucugCCGCGUucGCGCGGa -3'
miRNA:   3'- cGC-GCC-GACuua-GGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 7013 0.67 0.61093
Target:  5'- aGCGCGGCggcuucggUGGAcgucagguccUUCGCGCGcauCGCGa -3'
miRNA:   3'- -CGCGCCG--------ACUU----------AGGCGCGCuu-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 10457 0.67 0.61093
Target:  5'- cGCGCGGUcggcGAGguagCgGCGC--GCGCGGu -3'
miRNA:   3'- -CGCGCCGa---CUUa---GgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 20483 0.67 0.609873
Target:  5'- -aGCGGC-GAGUgcguaaUCGCGCGcaccaucGGCGCGGc -3'
miRNA:   3'- cgCGCCGaCUUA------GGCGCGC-------UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43577 0.67 0.600371
Target:  5'- aCGUGGgaGGucgagGUCaGCGCGAACGCa- -3'
miRNA:   3'- cGCGCCgaCU-----UAGgCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 46185 0.67 0.600371
Target:  5'- cGCGCuGCUGGcgcuccagcUCCGCGCGcuGCGCc- -3'
miRNA:   3'- -CGCGcCGACUu--------AGGCGCGCu-UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 36255 0.67 0.600371
Target:  5'- cCGgGGCUGAgcucgcccucGUCgGUGC--GCGCGGg -3'
miRNA:   3'- cGCgCCGACU----------UAGgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 63169 0.67 0.589836
Target:  5'- aGCGCuGCUGGGg-CGUGUGggUGCGc -3'
miRNA:   3'- -CGCGcCGACUUagGCGCGCuuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 53903 0.67 0.589836
Target:  5'- uCGUGGaC-GggUCUGCGCG-ACGCGc -3'
miRNA:   3'- cGCGCC-GaCuuAGGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 17778 0.67 0.589836
Target:  5'- aGCGCGGCagcgcGAcgCCuuGCGCgugcagGAACGCGa -3'
miRNA:   3'- -CGCGCCGa----CUuaGG--CGCG------CUUGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.