miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 8576 0.67 0.589836
Target:  5'- aGCGCGGC-----CUGCGCGAcgaaGCGaCGGc -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCGCU----UGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 15109 0.68 0.579334
Target:  5'- gGCGCGGC---GUCCG-GCugGAACGCGc -3'
miRNA:   3'- -CGCGCCGacuUAGGCgCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 36534 0.68 0.579334
Target:  5'- gGCGCGGCgacugGGAUUaucggGCGCacGAuccuCGCGGa -3'
miRNA:   3'- -CGCGCCGa----CUUAGg----CGCG--CUu---GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51613 0.68 0.579334
Target:  5'- uGCGCGauuuGCUccugCCGCGCaGAcaGCGCGGc -3'
miRNA:   3'- -CGCGC----CGAcuuaGGCGCG-CU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 24878 0.68 0.568873
Target:  5'- aGCGCcauc-GAUCUGCGCGAGCGCa- -3'
miRNA:   3'- -CGCGccgacUUAGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 28409 0.68 0.568873
Target:  5'- cGCGCGGUauUGAGcgCCGCGU--GCGCc- -3'
miRNA:   3'- -CGCGCCG--ACUUa-GGCGCGcuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 13343 0.68 0.56783
Target:  5'- cGUGCGGCcGuccUCCucGCGCGGcacgacgacgugcACGCGGc -3'
miRNA:   3'- -CGCGCCGaCuu-AGG--CGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 27558 0.68 0.558459
Target:  5'- aGCccCGGCgagGAcgCCGCGC-AGCGCGa -3'
miRNA:   3'- -CGc-GCCGa--CUuaGGCGCGcUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 15693 0.68 0.557421
Target:  5'- cGCGCGGCgc-GUCacaucauCGCGCGucgGCGcCGGg -3'
miRNA:   3'- -CGCGCCGacuUAG-------GCGCGCu--UGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 44711 0.68 0.5481
Target:  5'- gGCGUGGCUGcaucAGUUCaaG-GAGCGCGGc -3'
miRNA:   3'- -CGCGCCGAC----UUAGGcgCgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17109 0.68 0.5481
Target:  5'- cGCGCGGCgcUGA--CUGCaucgGCGGGCGuCGGu -3'
miRNA:   3'- -CGCGCCG--ACUuaGGCG----CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 14024 0.68 0.5481
Target:  5'- gGCGCGGCaGcggCCGgaGCcucGGGCGCGGg -3'
miRNA:   3'- -CGCGCCGaCuuaGGCg-CG---CUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17345 0.68 0.5481
Target:  5'- uCGCGGC--GAUCCGCGagaaGAucgACGCGa -3'
miRNA:   3'- cGCGCCGacUUAGGCGCg---CU---UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 14314 0.68 0.5481
Target:  5'- aGgGCGGCgGAA-CCGC-CGAGCuggGCGGc -3'
miRNA:   3'- -CgCGCCGaCUUaGGCGcGCUUG---CGCC- -5'
23936 3' -57.4 NC_005262.1 + 49231 0.68 0.5481
Target:  5'- -gGCGGCgcgcAGUCCGCGCGcgaggucCGCGa -3'
miRNA:   3'- cgCGCCGac--UUAGGCGCGCuu-----GCGCc -5'
23936 3' -57.4 NC_005262.1 + 28163 0.68 0.537802
Target:  5'- cGCGCGGCgcaa-CUGCGCGcg-GCGGc -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCGCuugCGCC- -5'
23936 3' -57.4 NC_005262.1 + 19656 0.68 0.537802
Target:  5'- cGCGCGcGC---GUCCG-GCcgGAACGCGGg -3'
miRNA:   3'- -CGCGC-CGacuUAGGCgCG--CUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 34985 0.68 0.537802
Target:  5'- aCGCGaGCUcGAga-UGCGCGGGCGCGa -3'
miRNA:   3'- cGCGC-CGA-CUuagGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 3844 0.68 0.537802
Target:  5'- aGCG-GGC-GAAUCUGCuucGCGAGCGCc- -3'
miRNA:   3'- -CGCgCCGaCUUAGGCG---CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 33969 0.68 0.534726
Target:  5'- aCGCGGCgucgagcugcugGAcgUCGUGCGuaacaugGGCGCGGa -3'
miRNA:   3'- cGCGCCGa-----------CUuaGGCGCGC-------UUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.