miRNA display CGI


Results 101 - 120 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 44140 0.7 0.467916
Target:  5'- cGCGUuccGGCcgGAcgCgCGCGCGAucgggcaggaGCGCGGc -3'
miRNA:   3'- -CGCG---CCGa-CUuaG-GCGCGCU----------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52782 0.7 0.467916
Target:  5'- uGCGCGacagccgccucGCUcGucagCCGUGCGAGCGCGa -3'
miRNA:   3'- -CGCGC-----------CGA-Cuua-GGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 56943 0.7 0.467916
Target:  5'- aGCGCacGCcG-AUCCGCGCGGGCgaguucGCGGg -3'
miRNA:   3'- -CGCGc-CGaCuUAGGCGCGCUUG------CGCC- -5'
23936 3' -57.4 NC_005262.1 + 18160 0.7 0.458306
Target:  5'- aGCGCGuGCccgccUGA--UCGCGCGAGCGCc- -3'
miRNA:   3'- -CGCGC-CG-----ACUuaGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 23009 0.7 0.457351
Target:  5'- cGUGCGGCaUGAAugcggcuUCCGCGUGGaguucaucgACGCa- -3'
miRNA:   3'- -CGCGCCG-ACUU-------AGGCGCGCU---------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 4411 0.7 0.448803
Target:  5'- cGCGCGcCUG---CUGCGCGAGCGCcuGGa -3'
miRNA:   3'- -CGCGCcGACuuaGGCGCGCUUGCG--CC- -5'
23936 3' -57.4 NC_005262.1 + 1378 0.7 0.445974
Target:  5'- cCGCGGUUGcguuacauaaccacAAUCCGCggGCGGGCGCu- -3'
miRNA:   3'- cGCGCCGAC--------------UUAGGCG--CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 35241 0.7 0.43941
Target:  5'- cGCGCGGCgGAAgCCccagauagGCGUGAACG-GGu -3'
miRNA:   3'- -CGCGCCGaCUUaGG--------CGCGCUUGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 22480 0.7 0.43941
Target:  5'- aGCGCGaagcGCUGAAgcuggCGCGCGAGCggaucgcgaaGCGGc -3'
miRNA:   3'- -CGCGC----CGACUUag---GCGCGCUUG----------CGCC- -5'
23936 3' -57.4 NC_005262.1 + 1143 0.7 0.43941
Target:  5'- uGCG-GGCUucGAugcugCCGCGCGGgcuugccauccuGCGCGGa -3'
miRNA:   3'- -CGCgCCGA--CUua---GGCGCGCU------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 60851 0.7 0.43013
Target:  5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3'
miRNA:   3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 45272 0.7 0.43013
Target:  5'- aGCGuCGaacGC-GAAcuUCCGCGCGAACGuCGGc -3'
miRNA:   3'- -CGC-GC---CGaCUU--AGGCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 51673 0.7 0.420967
Target:  5'- aGCGCGGC-GAucugCuCGCGCGcACgGCGGc -3'
miRNA:   3'- -CGCGCCGaCUua--G-GCGCGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 40484 0.7 0.420967
Target:  5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3'
miRNA:   3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 18680 0.7 0.420057
Target:  5'- cGCGCGGU---GUUCGCGgcacccgccgaguUGAGCGCGGu -3'
miRNA:   3'- -CGCGCCGacuUAGGCGC-------------GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43858 0.71 0.411922
Target:  5'- uGCGcCGGCaGGAccUCgGCGCGAucGCGCGc -3'
miRNA:   3'- -CGC-GCCGaCUU--AGgCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 14436 0.71 0.411922
Target:  5'- cGCGCGucGCcGAGUCgucaGCGAGCGCGGc -3'
miRNA:   3'- -CGCGC--CGaCUUAGgcg-CGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52845 0.71 0.402998
Target:  5'- aGCGCGaaUGccugCUGCGCGuAGCGCGGc -3'
miRNA:   3'- -CGCGCcgACuua-GGCGCGC-UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 40243 0.71 0.402113
Target:  5'- cGCGCGGCgGGcgguuggucaGUCUGCGCGGuccucccGCGCu- -3'
miRNA:   3'- -CGCGCCGaCU----------UAGGCGCGCU-------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 43750 0.71 0.402113
Target:  5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3'
miRNA:   3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.