miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 243 0.72 0.320799
Target:  5'- gGCgGCGGCgGGAcauUUCGCGCGGACGUa- -3'
miRNA:   3'- -CG-CGCCGaCUU---AGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 1143 0.7 0.43941
Target:  5'- uGCG-GGCUucGAugcugCCGCGCGGgcuugccauccuGCGCGGa -3'
miRNA:   3'- -CGCgCCGA--CUua---GGCGCGCU------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 1378 0.7 0.445974
Target:  5'- cCGCGGUUGcguuacauaaccacAAUCCGCggGCGGGCGCu- -3'
miRNA:   3'- cGCGCCGAC--------------UUAGGCG--CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 1397 0.66 0.653254
Target:  5'- uCGCGGCccuugcgcUGAugAUCCGCcaCGAcCGCGGc -3'
miRNA:   3'- cGCGCCG--------ACU--UAGGCGc-GCUuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 3733 0.67 0.642678
Target:  5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 3844 0.68 0.537802
Target:  5'- aGCG-GGC-GAAUCUGCuucGCGAGCGCc- -3'
miRNA:   3'- -CGCgCCGaCUUAGGCG---CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 4411 0.7 0.448803
Target:  5'- cGCGCGcCUG---CUGCGCGAGCGCcuGGa -3'
miRNA:   3'- -CGCGCcGACuuaGGCGCGCUUGCG--CC- -5'
23936 3' -57.4 NC_005262.1 + 4504 0.66 0.663813
Target:  5'- cGUcCGGCaUGuccucguuGAUCCGCGCG-ACGCGc -3'
miRNA:   3'- -CGcGCCG-AC--------UUAGGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 4559 0.72 0.344082
Target:  5'- cGCGCGGCgc-AUCuCGCGCcAGCgGCGGc -3'
miRNA:   3'- -CGCGCCGacuUAG-GCGCGcUUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 4659 0.67 0.641619
Target:  5'- cGCGCGGC-GAcgCgGCcCGGccgguucgccucgGCGCGGu -3'
miRNA:   3'- -CGCGCCGaCUuaGgCGcGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4786 0.74 0.258122
Target:  5'- cCGCGGCUugcaGAcgGUCgaaGCGCGAcgGCGCGGg -3'
miRNA:   3'- cGCGCCGA----CU--UAGg--CGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4897 0.67 0.621507
Target:  5'- cGC-CGGcCUGA--UCGCGC-AGCGCGGc -3'
miRNA:   3'- -CGcGCC-GACUuaGGCGCGcUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 5160 0.72 0.347277
Target:  5'- gGCGC-GCUGAucggugacggccggcGUCgcggGCGCGGGCGCGGc -3'
miRNA:   3'- -CGCGcCGACU---------------UAGg---CGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 5591 0.69 0.517415
Target:  5'- cGgGCGGCgccgcucUCCGCagGCGA-CGCGGa -3'
miRNA:   3'- -CgCGCCGacuu---AGGCG--CGCUuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 6883 0.72 0.320799
Target:  5'- aGCGCGGCcuUGAucucgCCG-GCGAGCGUGu -3'
miRNA:   3'- -CGCGCCG--ACUua---GGCgCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 7013 0.67 0.61093
Target:  5'- aGCGCGGCggcuucggUGGAcgucagguccUUCGCGCGcauCGCGa -3'
miRNA:   3'- -CGCGCCG--------ACUU----------AGGCGCGCuu-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 8053 0.67 0.642678
Target:  5'- aGCGCGcGU----UCUGgGUGAGCGUGGg -3'
miRNA:   3'- -CGCGC-CGacuuAGGCgCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8194 0.67 0.632092
Target:  5'- cGC-CGGaaGGcgCCGCaGCGAugauccGCGCGGg -3'
miRNA:   3'- -CGcGCCgaCUuaGGCG-CGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8576 0.67 0.589836
Target:  5'- aGCGCGGC-----CUGCGCGAcgaaGCGaCGGc -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCGCU----UGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 8646 0.66 0.675395
Target:  5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3'
miRNA:   3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.