miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 10214 0.66 0.684838
Target:  5'- uGCGCGGUacaUGcugccGGUCaGCGCGuGCGCGc -3'
miRNA:   3'- -CGCGCCG---AC-----UUAGgCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 10457 0.67 0.61093
Target:  5'- cGCGCGGUcggcGAGguagCgGCGC--GCGCGGu -3'
miRNA:   3'- -CGCGCCGa---CUUa---GgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 10699 0.72 0.360267
Target:  5'- uGCGCaGaucGAggCCGCGCGcACGCGGc -3'
miRNA:   3'- -CGCGcCga-CUuaGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 10789 0.68 0.527572
Target:  5'- cGCGCGGUacug-CUGCGCGAGCugccGCGa -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCGCUUG----CGCc -5'
23936 3' -57.4 NC_005262.1 + 11394 0.72 0.335406
Target:  5'- cGCGCGGCUccacgccGAAgCCGCGCc-GCGcCGGg -3'
miRNA:   3'- -CGCGCCGA-------CUUaGGCGCGcuUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 11550 0.66 0.684838
Target:  5'- cGC-CGGCUGAagugcAUCaCGCGCGcugcuaugccGGCgGCGGc -3'
miRNA:   3'- -CGcGCCGACU-----UAG-GCGCGC----------UUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 12184 0.73 0.313305
Target:  5'- uGCGCGGCaGGAgcaaaUCGCGCaGAugGCGa -3'
miRNA:   3'- -CGCGCCGaCUUa----GGCGCG-CUugCGCc -5'
23936 3' -57.4 NC_005262.1 + 12223 0.67 0.638444
Target:  5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3'
miRNA:   3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12323 0.66 0.705676
Target:  5'- aUGCGGCUcgugCCGCaGCGcGCgGCGGc -3'
miRNA:   3'- cGCGCCGAcuuaGGCG-CGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 12418 0.69 0.477628
Target:  5'- gGCGCGGCcuuggCCGgcguCGCGGacgGCGCGGu -3'
miRNA:   3'- -CGCGCCGacuuaGGC----GCGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12485 0.68 0.531656
Target:  5'- cGCGCGGCauacgcagUGAgcgaaaccgcgcuucAgaugCCGCGCG-ACGCGa -3'
miRNA:   3'- -CGCGCCG--------ACU---------------Ua---GGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 12821 0.66 0.695285
Target:  5'- gGCGCGuGaaGAAggaGCGCGGccuCGCGGg -3'
miRNA:   3'- -CGCGC-CgaCUUaggCGCGCUu--GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13129 0.67 0.632092
Target:  5'- cCGUGGCacaauuaGGuccgCCGCGCGcgcuGCGCGGc -3'
miRNA:   3'- cGCGCCGa------CUua--GGCGCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13343 0.68 0.56783
Target:  5'- cGUGCGGCcGuccUCCucGCGCGGcacgacgacgugcACGCGGc -3'
miRNA:   3'- -CGCGCCGaCuu-AGG--CGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13362 0.67 0.632092
Target:  5'- aGCGCuGCgccagcacgGAAUCCuGCGCcuGGGCGCGc -3'
miRNA:   3'- -CGCGcCGa--------CUUAGG-CGCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 13396 0.73 0.298716
Target:  5'- cCGCGGCgcUGAucgCCGCGCGGuuCGCGu -3'
miRNA:   3'- cGCGCCG--ACUua-GGCGCGCUu-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 13509 0.72 0.363567
Target:  5'- cGCGCGGCcGucacgggcucggCCgGCGCGGGCGCGc -3'
miRNA:   3'- -CGCGCCGaCuua---------GG-CGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 13694 0.74 0.277829
Target:  5'- gGC-CGGCUucuGUUCGCGCG-GCGCGGg -3'
miRNA:   3'- -CGcGCCGAcu-UAGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 13803 0.74 0.245629
Target:  5'- gGCGCGGCUucAUCgGCGgGAGCG-GGc -3'
miRNA:   3'- -CGCGCCGAcuUAGgCGCgCUUGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 14024 0.68 0.5481
Target:  5'- gGCGCGGCaGcggCCGgaGCcucGGGCGCGGg -3'
miRNA:   3'- -CGCGCCGaCuuaGGCg-CG---CUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.