miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 14314 0.68 0.5481
Target:  5'- aGgGCGGCgGAA-CCGC-CGAGCuggGCGGc -3'
miRNA:   3'- -CgCGCCGaCUUaGGCGcGCUUG---CGCC- -5'
23936 3' -57.4 NC_005262.1 + 14329 0.66 0.706712
Target:  5'- uGCGCGcuucagcgugcucuuGCUGAccuucucggucacgAUCUuCGCGAguGCGCGGu -3'
miRNA:   3'- -CGCGC---------------CGACU--------------UAGGcGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 14436 0.71 0.411922
Target:  5'- cGCGCGucGCcGAGUCgucaGCGAGCGCGGc -3'
miRNA:   3'- -CGCGC--CGaCUUAGgcg-CGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 15109 0.68 0.579334
Target:  5'- gGCGCGGC---GUCCG-GCugGAACGCGc -3'
miRNA:   3'- -CGCGCCGacuUAGGCgCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 15143 0.72 0.352109
Target:  5'- uCGCGGCcggcgucGAGUCgGCGCGGAUGuUGGa -3'
miRNA:   3'- cGCGCCGa------CUUAGgCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 15334 0.79 0.121553
Target:  5'- aCGCGGCUcgcGAUCCGCGCGGcauACGCGc -3'
miRNA:   3'- cGCGCCGAc--UUAGGCGCGCU---UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 15632 0.69 0.517415
Target:  5'- gGCGCGGCUGAa--CGCGuCGGGCa--- -3'
miRNA:   3'- -CGCGCCGACUuagGCGC-GCUUGcgcc -5'
23936 3' -57.4 NC_005262.1 + 15693 0.68 0.557421
Target:  5'- cGCGCGGCgc-GUCacaucauCGCGCGucgGCGcCGGg -3'
miRNA:   3'- -CGCGCCGacuUAG-------GCGCGCu--UGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 15766 0.69 0.473731
Target:  5'- gGCGCGGCcGGcugCUGCGUGGucuggguguugguCGCGGg -3'
miRNA:   3'- -CGCGCCGaCUua-GGCGCGCUu------------GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 15880 0.69 0.487438
Target:  5'- aCGCGauggcGCUGAuccgCCGCGUGcGCGCGa -3'
miRNA:   3'- cGCGC-----CGACUua--GGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 16619 0.67 0.638444
Target:  5'- cGCGUuucGaGCUGGGcgauaucgucgugCUGCGCGAgcACGCGGa -3'
miRNA:   3'- -CGCG---C-CGACUUa------------GGCGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17096 0.66 0.705676
Target:  5'- aCGCGGCggg--CCGCGagGAgguccaccGCGCGGc -3'
miRNA:   3'- cGCGCCGacuuaGGCGCg-CU--------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17109 0.68 0.5481
Target:  5'- cGCGCGGCgcUGA--CUGCaucgGCGGGCGuCGGu -3'
miRNA:   3'- -CGCGCCG--ACUuaGGCG----CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 17186 0.66 0.684838
Target:  5'- cGCGUcgGGCgGGAUCUGUGgCGucUGCGGc -3'
miRNA:   3'- -CGCG--CCGaCUUAGGCGC-GCuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17258 0.74 0.264561
Target:  5'- aGCgGCGGCcGGcgCCGCGCuGGgcugcuGCGCGGg -3'
miRNA:   3'- -CG-CGCCGaCUuaGGCGCG-CU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17343 0.83 0.070293
Target:  5'- gGCGCGGCauucGggUCCgGCGCGGgcgGCGCGGc -3'
miRNA:   3'- -CGCGCCGa---CuuAGG-CGCGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17345 0.68 0.5481
Target:  5'- uCGCGGC--GAUCCGCGagaaGAucgACGCGa -3'
miRNA:   3'- cGCGCCGacUUAGGCGCg---CU---UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 17490 0.66 0.695285
Target:  5'- aGCGC-GCg----CCGCGCGcGACGCGu -3'
miRNA:   3'- -CGCGcCGacuuaGGCGCGC-UUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 17608 0.66 0.674344
Target:  5'- cGCGCGgaGCUGGAgcgCCagcaGCGCGAGCuCGc -3'
miRNA:   3'- -CGCGC--CGACUUa--GG----CGCGCUUGcGCc -5'
23936 3' -57.4 NC_005262.1 + 17778 0.67 0.589836
Target:  5'- aGCGCGGCagcgcGAcgCCuuGCGCgugcagGAACGCGa -3'
miRNA:   3'- -CGCGCCGa----CUuaGG--CGCG------CUUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.