miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 18160 0.7 0.458306
Target:  5'- aGCGCGuGCccgccUGA--UCGCGCGAGCGCc- -3'
miRNA:   3'- -CGCGC-CG-----ACUuaGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 18680 0.7 0.420057
Target:  5'- cGCGCGGU---GUUCGCGgcacccgccgaguUGAGCGCGGu -3'
miRNA:   3'- -CGCGCCGacuUAGGCGC-------------GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 18790 0.66 0.695285
Target:  5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3'
miRNA:   3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 19102 0.75 0.226688
Target:  5'- cGCGCGGCgaugccacguucGGAUCgGgCGCGGGCGCGu -3'
miRNA:   3'- -CGCGCCGa-----------CUUAGgC-GCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 19656 0.68 0.537802
Target:  5'- cGCGCGcGC---GUCCG-GCcgGAACGCGGg -3'
miRNA:   3'- -CGCGC-CGacuUAGGCgCG--CUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 19886 0.72 0.352109
Target:  5'- cCGCGGUUGGcgCCGCGCuGAcCGCc- -3'
miRNA:   3'- cGCGCCGACUuaGGCGCG-CUuGCGcc -5'
23936 3' -57.4 NC_005262.1 + 20483 0.67 0.609873
Target:  5'- -aGCGGC-GAGUgcguaaUCGCGCGcaccaucGGCGCGGc -3'
miRNA:   3'- cgCGCCGaCUUA------GGCGCGC-------UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 21533 0.69 0.517415
Target:  5'- cGUGCcGCUcGucgCCGCaGUGAGCGCGGc -3'
miRNA:   3'- -CGCGcCGA-CuuaGGCG-CGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 21685 0.72 0.328427
Target:  5'- -aGCGGC-GGcgCCGCGCugcuguACGCGGg -3'
miRNA:   3'- cgCGCCGaCUuaGGCGCGcu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 21822 0.72 0.360267
Target:  5'- uGCGCGGCgguGUCaggcaacagGCGCGGcacaagGCGCGGg -3'
miRNA:   3'- -CGCGCCGacuUAGg--------CGCGCU------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 22364 0.72 0.320799
Target:  5'- cGCGUGGUgcgGAggguGUCCgGCGCGGAuCGCGa -3'
miRNA:   3'- -CGCGCCGa--CU----UAGG-CGCGCUU-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 22480 0.7 0.43941
Target:  5'- aGCGCGaagcGCUGAAgcuggCGCGCGAGCggaucgcgaaGCGGc -3'
miRNA:   3'- -CGCGC----CGACUUag---GCGCGCUUG----------CGCC- -5'
23936 3' -57.4 NC_005262.1 + 22526 0.81 0.097826
Target:  5'- cGCGCGGCcGAAUCUGCGUGAuCGCc- -3'
miRNA:   3'- -CGCGCCGaCUUAGGCGCGCUuGCGcc -5'
23936 3' -57.4 NC_005262.1 + 23009 0.7 0.457351
Target:  5'- cGUGCGGCaUGAAugcggcuUCCGCGUGGaguucaucgACGCa- -3'
miRNA:   3'- -CGCGCCG-ACUU-------AGGCGCGCU---------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 23138 0.66 0.674344
Target:  5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3'
miRNA:   3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 23397 1.12 0.000614
Target:  5'- cGCGCGGCUGAAUCCGCGCGAACGCGGc -3'
miRNA:   3'- -CGCGCCGACUUAGGCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 23535 0.73 0.301591
Target:  5'- aGCGCGGgaGGA-CCGCGCagacuGAccaaccgcccgccgcGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaGGCGCG-----CU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 24752 0.69 0.505331
Target:  5'- cGUGCGGCcGAAguggauucagcaCCGCgGCGAGC-CGGg -3'
miRNA:   3'- -CGCGCCGaCUUa-----------GGCG-CGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 24878 0.68 0.568873
Target:  5'- aGCGCcauc-GAUCUGCGCGAGCGCa- -3'
miRNA:   3'- -CGCGccgacUUAGGCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 26534 0.71 0.376975
Target:  5'- aCGUGGCUcGGccguuGUUCGUGCGGuucACGCGGa -3'
miRNA:   3'- cGCGCCGA-CU-----UAGGCGCGCU---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.