Results 81 - 100 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 27558 | 0.68 | 0.558459 |
Target: 5'- aGCccCGGCgagGAcgCCGCGC-AGCGCGa -3' miRNA: 3'- -CGc-GCCGa--CUuaGGCGCGcUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 27778 | 0.66 | 0.673292 |
Target: 5'- aCGCGGCacGAUgaugcgacggcacUCGCGCGGcACGUGGa -3' miRNA: 3'- cGCGCCGacUUA-------------GGCGCGCU-UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 28163 | 0.68 | 0.537802 |
Target: 5'- cGCGCGGCgcaa-CUGCGCGcg-GCGGc -3' miRNA: 3'- -CGCGCCGacuuaGGCGCGCuugCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 28409 | 0.68 | 0.568873 |
Target: 5'- cGCGCGGUauUGAGcgCCGCGU--GCGCc- -3' miRNA: 3'- -CGCGCCG--ACUUa-GGCGCGcuUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 28697 | 0.66 | 0.678546 |
Target: 5'- gGCGCGGUcGAcgauaucgacgaguUCCGcCGCGAggccGCGCGc -3' miRNA: 3'- -CGCGCCGaCUu-------------AGGC-GCGCU----UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 29309 | 0.66 | 0.705676 |
Target: 5'- cGCGCGcCg----CCGCGCGGAUGUGc -3' miRNA: 3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 29885 | 0.66 | 0.663813 |
Target: 5'- cGCGCGGCgcuucaggaagaUGAcgGUUCGgGCG-AUGCGa -3' miRNA: 3'- -CGCGCCG------------ACU--UAGGCgCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 30893 | 0.66 | 0.699449 |
Target: 5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3' miRNA: 3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 31369 | 0.69 | 0.477628 |
Target: 5'- uGC-CGGCgaUGAAaCCGgcaGCGAugGCGGg -3' miRNA: 3'- -CGcGCCG--ACUUaGGCg--CGCUugCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 32036 | 0.67 | 0.642678 |
Target: 5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3' miRNA: 3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 32867 | 0.72 | 0.320799 |
Target: 5'- cGUGCGGCgccGAGcuguucgCCGCGuCGAACGuCGGc -3' miRNA: 3'- -CGCGCCGa--CUUa------GGCGC-GCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 33132 | 0.69 | 0.507336 |
Target: 5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3' miRNA: 3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 33969 | 0.68 | 0.534726 |
Target: 5'- aCGCGGCgucgagcugcugGAcgUCGUGCGuaacaugGGCGCGGa -3' miRNA: 3'- cGCGCCGa-----------CUuaGGCGCGC-------UUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 34123 | 0.8 | 0.106162 |
Target: 5'- cGCG-GGUUGGGcgggCUGCGCGGGCGCGGg -3' miRNA: 3'- -CGCgCCGACUUa---GGCGCGCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 34496 | 0.72 | 0.3513 |
Target: 5'- cGCGCGGCgg----CGCGCGAcuucugcgagacgACGCGGc -3' miRNA: 3'- -CGCGCCGacuuagGCGCGCU-------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 34985 | 0.68 | 0.537802 |
Target: 5'- aCGCGaGCUcGAga-UGCGCGGGCGCGa -3' miRNA: 3'- cGCGC-CGA-CUuagGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35199 | 0.71 | 0.368556 |
Target: 5'- cGCGUGGCcagccuacGUCCGCaaGGAUGCGGa -3' miRNA: 3'- -CGCGCCGacu-----UAGGCGcgCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35241 | 0.7 | 0.43941 |
Target: 5'- cGCGCGGCgGAAgCCccagauagGCGUGAACG-GGu -3' miRNA: 3'- -CGCGCCGaCUUaGG--------CGCGCUUGCgCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35390 | 0.69 | 0.497343 |
Target: 5'- aCGCGGCgcucAAUaCCGCGCGcACGCu- -3' miRNA: 3'- cGCGCCGac--UUA-GGCGCGCuUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35567 | 0.66 | 0.695285 |
Target: 5'- gGCGCGG--GAAagaGCGCGAauguugugcucgGCGCGGg -3' miRNA: 3'- -CGCGCCgaCUUaggCGCGCU------------UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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