miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 63722 0.73 0.284659
Target:  5'- gGCGCGGCcGAcuUCUuCGCGAGcCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUu-AGGcGCGCUU-GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 63540 0.66 0.702566
Target:  5'- aGCGCGuGUac-GUCCGCGCGAaaugucccgccgccGCcgGCGGu -3'
miRNA:   3'- -CGCGC-CGacuUAGGCGCGCU--------------UG--CGCC- -5'
23936 3' -57.4 NC_005262.1 + 63169 0.67 0.589836
Target:  5'- aGCGCuGCUGGGg-CGUGUGggUGCGc -3'
miRNA:   3'- -CGCGcCGACUUagGCGCGCuuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 62610 0.73 0.305215
Target:  5'- cGCGCGGC-GAAcucgcacugggcuUCCGCGCaGGauggcaagcccGCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUU-------------AGGCGCG-CU-----------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 60851 0.7 0.43013
Target:  5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3'
miRNA:   3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 60509 0.68 0.527572
Target:  5'- cGCGCGGCgcaggCCGCcaaGAGCGUGa -3'
miRNA:   3'- -CGCGCCGacuuaGGCGcg-CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 58984 0.67 0.621507
Target:  5'- cGCGcCGGC-GAAaCCaGCGCu-ACGCGGc -3'
miRNA:   3'- -CGC-GCCGaCUUaGG-CGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 58884 0.71 0.376975
Target:  5'- cGCGCguuGGCUGcugCCGCGCu-GCGCGa -3'
miRNA:   3'- -CGCG---CCGACuuaGGCGCGcuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 58242 0.67 0.642678
Target:  5'- uGCGUGGUgacGAUCCGCGCaucGAGCaCGa -3'
miRNA:   3'- -CGCGCCGac-UUAGGCGCG---CUUGcGCc -5'
23936 3' -57.4 NC_005262.1 + 57938 0.69 0.497343
Target:  5'- uCGCGGCauucaacgUGGAgg-GCGCGAGCGCGc -3'
miRNA:   3'- cGCGCCG--------ACUUaggCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 57665 0.67 0.632092
Target:  5'- -gGCGGCacGAUCgacuucucgCGCGcCGGGCGCGGc -3'
miRNA:   3'- cgCGCCGacUUAG---------GCGC-GCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 56943 0.7 0.467916
Target:  5'- aGCGCacGCcG-AUCCGCGCGGGCgaguucGCGGg -3'
miRNA:   3'- -CGCGc-CGaCuUAGGCGCGCUUG------CGCC- -5'
23936 3' -57.4 NC_005262.1 + 56907 0.66 0.695285
Target:  5'- aCGCGGCUcGAAaaCGCGau--CGCGGc -3'
miRNA:   3'- cGCGCCGA-CUUagGCGCgcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 55759 0.67 0.642678
Target:  5'- aCGCGcGCUGcgucAGUCCuGaCGCGAGC-CGGa -3'
miRNA:   3'- cGCGC-CGAC----UUAGG-C-GCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 55625 0.67 0.61093
Target:  5'- uGCGCaGCaaGAAgccgggCCGCGCGcuCGUGGc -3'
miRNA:   3'- -CGCGcCGa-CUUa-----GGCGCGCuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 54989 0.66 0.68379
Target:  5'- gGCGCGGCauucagGAAggcgacauguaccUCgCGCacGCGGucgGCGCGGg -3'
miRNA:   3'- -CGCGCCGa-----CUU-------------AG-GCG--CGCU---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 54198 0.72 0.336188
Target:  5'- aGCGCGuGCUccagcgcCCGCGCGAGC-CGGa -3'
miRNA:   3'- -CGCGC-CGAcuua---GGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 53903 0.67 0.589836
Target:  5'- uCGUGGaC-GggUCUGCGCG-ACGCGc -3'
miRNA:   3'- cGCGCC-GaCuuAGGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 53101 0.72 0.344082
Target:  5'- cGCGCGGCcucGAUCUGCGCaugcaGGAUGCGu -3'
miRNA:   3'- -CGCGCCGac-UUAGGCGCG-----CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 53013 0.72 0.360267
Target:  5'- cGCGCaGCaGua-CCGCGCGcccGGCGCGGg -3'
miRNA:   3'- -CGCGcCGaCuuaGGCGCGC---UUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.