miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 52968 0.66 0.674344
Target:  5'- aGCGCGGCgGA---CGCGCauGCGCuGGu -3'
miRNA:   3'- -CGCGCCGaCUuagGCGCGcuUGCG-CC- -5'
23936 3' -57.4 NC_005262.1 + 52845 0.71 0.402998
Target:  5'- aGCGCGaaUGccugCUGCGCGuAGCGCGGc -3'
miRNA:   3'- -CGCGCcgACuua-GGCGCGC-UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52835 0.74 0.277829
Target:  5'- -aGCGGCUGAAggCUGCGCucACGCa- -3'
miRNA:   3'- cgCGCCGACUUa-GGCGCGcuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 52782 0.7 0.467916
Target:  5'- uGCGCGacagccgccucGCUcGucagCCGUGCGAGCGCGa -3'
miRNA:   3'- -CGCGC-----------CGA-Cuua-GGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 52400 0.72 0.320799
Target:  5'- gGCGCGGCUucggcgugGAGcCgCGCGCGAACGUc- -3'
miRNA:   3'- -CGCGCCGA--------CUUaG-GCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 52318 0.8 0.109086
Target:  5'- aCGCGGCccaUGugcUCgCGCGCGAGCGCGGu -3'
miRNA:   3'- cGCGCCG---ACuu-AG-GCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51914 0.66 0.674344
Target:  5'- cCGCGGCcaccuUUCGCGCGAuacacgucgccgACaGCGGg -3'
miRNA:   3'- cGCGCCGacuu-AGGCGCGCU------------UG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 51830 0.73 0.305944
Target:  5'- aGCGCGGCcGAcg-UGCGCGAagugcugaaGCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUuagGCGCGCU---------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51673 0.7 0.420967
Target:  5'- aGCGCGGC-GAucugCuCGCGCGcACgGCGGc -3'
miRNA:   3'- -CGCGCCGaCUua--G-GCGCGCuUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 51613 0.68 0.579334
Target:  5'- uGCGCGauuuGCUccugCCGCGCaGAcaGCGCGGc -3'
miRNA:   3'- -CGCGC----CGAcuuaGGCGCG-CU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 51333 0.66 0.684838
Target:  5'- cGCGCGGCaagaucGAAUCCGCcauGC-AGCuCGGc -3'
miRNA:   3'- -CGCGCCGa-----CUUAGGCG---CGcUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 51192 0.71 0.376128
Target:  5'- aCGCGGCggcccgcUGGAgCCGCGCGGGCGauGc -3'
miRNA:   3'- cGCGCCG-------ACUUaGGCGCGCUUGCgcC- -5'
23936 3' -57.4 NC_005262.1 + 50422 0.67 0.642678
Target:  5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3'
miRNA:   3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 50403 0.75 0.227835
Target:  5'- cGCGCGGC-GAucagcgCCGCG-GAGCGCGa -3'
miRNA:   3'- -CGCGCCGaCUua----GGCGCgCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 50282 0.72 0.328427
Target:  5'- cGCGcCGGCcGAGcCCGUGaCGGccGCGCGGa -3'
miRNA:   3'- -CGC-GCCGaCUUaGGCGC-GCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 49231 0.68 0.5481
Target:  5'- -gGCGGCgcgcAGUCCGCGCGcgaggucCGCGa -3'
miRNA:   3'- cgCGCCGac--UUAGGCGCGCuu-----GCGCc -5'
23936 3' -57.4 NC_005262.1 + 48466 0.72 0.360267
Target:  5'- cGCGCGGaucgcGAG-CCGCGUGGGCaCGGg -3'
miRNA:   3'- -CGCGCCga---CUUaGGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 48411 0.66 0.695285
Target:  5'- aGCGCGGCgaAAUCCcgaacaCGaCGGACgGCGGc -3'
miRNA:   3'- -CGCGCCGacUUAGGc-----GC-GCUUG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 47896 0.74 0.251812
Target:  5'- uCGCGGCgcacgUCGCGCGcACGCGGc -3'
miRNA:   3'- cGCGCCGacuuaGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 47132 0.67 0.631034
Target:  5'- gGCuGCGGCcacuUGAacuugucGUCCGCGUGcuCGCGc -3'
miRNA:   3'- -CG-CGCCG----ACU-------UAGGCGCGCuuGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.