miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 46732 0.66 0.663813
Target:  5'- cGCGCcuaucGGCgccGUgCGCGCGAcgagcuCGCGGa -3'
miRNA:   3'- -CGCG-----CCGacuUAgGCGCGCUu-----GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 46248 0.73 0.291621
Target:  5'- cCGCGGCUGccgccUCgCGCGCGAcCGCGu -3'
miRNA:   3'- cGCGCCGACuu---AG-GCGCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 46185 0.67 0.600371
Target:  5'- cGCGCuGCUGGcgcuccagcUCCGCGCGcuGCGCc- -3'
miRNA:   3'- -CGCGcCGACUu--------AGGCGCGCu-UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 45272 0.7 0.43013
Target:  5'- aGCGuCGaacGC-GAAcuUCCGCGCGAACGuCGGc -3'
miRNA:   3'- -CGC-GC---CGaCUU--AGGCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 44988 0.69 0.497343
Target:  5'- cGUGCaGC--AGUCCGCGCGGcagGCgGCGGa -3'
miRNA:   3'- -CGCGcCGacUUAGGCGCGCU---UG-CGCC- -5'
23936 3' -57.4 NC_005262.1 + 44711 0.68 0.5481
Target:  5'- gGCGUGGCUGcaucAGUUCaaG-GAGCGCGGc -3'
miRNA:   3'- -CGCGCCGAC----UUAGGcgCgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 44140 0.7 0.467916
Target:  5'- cGCGUuccGGCcgGAcgCgCGCGCGAucgggcaggaGCGCGGc -3'
miRNA:   3'- -CGCG---CCGa-CUuaG-GCGCGCU----------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 43858 0.71 0.411922
Target:  5'- uGCGcCGGCaGGAccUCgGCGCGAucGCGCGc -3'
miRNA:   3'- -CGC-GCCGaCUU--AGgCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 43750 0.71 0.402113
Target:  5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3'
miRNA:   3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 43693 0.69 0.487438
Target:  5'- cCG-GGCcGAAUUCGCGCGGcgACGCGc -3'
miRNA:   3'- cGCgCCGaCUUAGGCGCGCU--UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 43577 0.67 0.600371
Target:  5'- aCGUGGgaGGucgagGUCaGCGCGAACGCa- -3'
miRNA:   3'- cGCGCCgaCU-----UAGgCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 43000 0.74 0.251812
Target:  5'- uCGCGGCUGcucgauauggaaGAUgCGCGCGuGCGCGa -3'
miRNA:   3'- cGCGCCGAC------------UUAgGCGCGCuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 41971 0.66 0.653254
Target:  5'- cGCGCcuguuGcCUGAcaccgCCGCGCaGAACGCGa -3'
miRNA:   3'- -CGCGc----C-GACUua---GGCGCG-CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 41578 0.73 0.298716
Target:  5'- gGCGCGGCcgUGAgcuuGUCgaGCGCGAGCcCGGc -3'
miRNA:   3'- -CGCGCCG--ACU----UAGg-CGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 41390 0.77 0.171716
Target:  5'- -gGCGGCgcucGAUCaGUGCGAACGCGGg -3'
miRNA:   3'- cgCGCCGac--UUAGgCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 41163 0.67 0.642678
Target:  5'- aGCGCGcGCagGAGggcaCCGcCGCGAuCGCGu -3'
miRNA:   3'- -CGCGC-CGa-CUUa---GGC-GCGCUuGCGCc -5'
23936 3' -57.4 NC_005262.1 + 40867 0.72 0.336188
Target:  5'- cGCGCGGagcaUGGcgUCG-GCGAGCGCGu -3'
miRNA:   3'- -CGCGCCg---ACUuaGGCgCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 40484 0.7 0.420967
Target:  5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3'
miRNA:   3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 40382 0.67 0.61093
Target:  5'- uCGaCGGcCUGucugCCGCGUucGCGCGGa -3'
miRNA:   3'- cGC-GCC-GACuua-GGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 40243 0.71 0.402113
Target:  5'- cGCGCGGCgGGcgguuggucaGUCUGCGCGGuccucccGCGCu- -3'
miRNA:   3'- -CGCGCCGaCU----------UAGGCGCGCU-------UGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.