miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 39914 0.67 0.61093
Target:  5'- cGUGCGGgUGAcacaauacGUgUGCGCc-GCGCGGg -3'
miRNA:   3'- -CGCGCCgACU--------UAgGCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 39601 0.66 0.674344
Target:  5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3'
miRNA:   3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 38546 0.66 0.663813
Target:  5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3'
miRNA:   3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 38431 0.68 0.527572
Target:  5'- gGCGCGGUcGAgAUCaCGC-CGGACGaCGGc -3'
miRNA:   3'- -CGCGCCGaCU-UAG-GCGcGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 38230 0.68 0.527572
Target:  5'- gGCGCagacGGCUGccGUCUGguUGgGAGCGCGGa -3'
miRNA:   3'- -CGCG----CCGACu-UAGGC--GCgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 36871 0.69 0.477628
Target:  5'- -gGCGGC-GAAUCCGgcuCGgGAucgucGCGCGGa -3'
miRNA:   3'- cgCGCCGaCUUAGGC---GCgCU-----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 36534 0.68 0.579334
Target:  5'- gGCGCGGCgacugGGAUUaucggGCGCacGAuccuCGCGGa -3'
miRNA:   3'- -CGCGCCGa----CUUAGg----CGCG--CUu---GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 36255 0.67 0.600371
Target:  5'- cCGgGGCUGAgcucgcccucGUCgGUGC--GCGCGGg -3'
miRNA:   3'- cGCgCCGACU----------UAGgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 35639 0.69 0.487438
Target:  5'- cGCGCaGUUGcg-CCGCGCGcuCGgGGa -3'
miRNA:   3'- -CGCGcCGACuuaGGCGCGCuuGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 35567 0.66 0.695285
Target:  5'- gGCGCGG--GAAagaGCGCGAauguugugcucgGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaggCGCGCU------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 35390 0.69 0.497343
Target:  5'- aCGCGGCgcucAAUaCCGCGCGcACGCu- -3'
miRNA:   3'- cGCGCCGac--UUA-GGCGCGCuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 35241 0.7 0.43941
Target:  5'- cGCGCGGCgGAAgCCccagauagGCGUGAACG-GGu -3'
miRNA:   3'- -CGCGCCGaCUUaGG--------CGCGCUUGCgCC- -5'
23936 3' -57.4 NC_005262.1 + 35199 0.71 0.368556
Target:  5'- cGCGUGGCcagccuacGUCCGCaaGGAUGCGGa -3'
miRNA:   3'- -CGCGCCGacu-----UAGGCGcgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 34985 0.68 0.537802
Target:  5'- aCGCGaGCUcGAga-UGCGCGGGCGCGa -3'
miRNA:   3'- cGCGC-CGA-CUuagGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 34496 0.72 0.3513
Target:  5'- cGCGCGGCgg----CGCGCGAcuucugcgagacgACGCGGc -3'
miRNA:   3'- -CGCGCCGacuuagGCGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 34123 0.8 0.106162
Target:  5'- cGCG-GGUUGGGcgggCUGCGCGGGCGCGGg -3'
miRNA:   3'- -CGCgCCGACUUa---GGCGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 33969 0.68 0.534726
Target:  5'- aCGCGGCgucgagcugcugGAcgUCGUGCGuaacaugGGCGCGGa -3'
miRNA:   3'- cGCGCCGa-----------CUuaGGCGCGC-------UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 33132 0.69 0.507336
Target:  5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3'
miRNA:   3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 32867 0.72 0.320799
Target:  5'- cGUGCGGCgccGAGcuguucgCCGCGuCGAACGuCGGc -3'
miRNA:   3'- -CGCGCCGa--CUUa------GGCGC-GCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 32036 0.67 0.642678
Target:  5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3'
miRNA:   3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.