miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 43750 0.71 0.402113
Target:  5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3'
miRNA:   3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 58884 0.71 0.376975
Target:  5'- cGCGCguuGGCUGcugCCGCGCu-GCGCGa -3'
miRNA:   3'- -CGCG---CCGACuuaGGCGCGcuUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 50282 0.72 0.328427
Target:  5'- cGCGcCGGCcGAGcCCGUGaCGGccGCGCGGa -3'
miRNA:   3'- -CGC-GCCGaCUUaGGCGC-GCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 21685 0.72 0.328427
Target:  5'- -aGCGGC-GGcgCCGCGCugcuguACGCGGg -3'
miRNA:   3'- cgCGCCGaCUuaGGCGCGcu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 22364 0.72 0.320799
Target:  5'- cGCGUGGUgcgGAggguGUCCgGCGCGGAuCGCGa -3'
miRNA:   3'- -CGCGCCGa--CU----UAGG-CGCGCUU-GCGCc -5'
23936 3' -57.4 NC_005262.1 + 32867 0.72 0.320799
Target:  5'- cGUGCGGCgccGAGcuguucgCCGCGuCGAACGuCGGc -3'
miRNA:   3'- -CGCGCCGa--CUUa------GGCGC-GCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 12184 0.73 0.313305
Target:  5'- uGCGCGGCaGGAgcaaaUCGCGCaGAugGCGa -3'
miRNA:   3'- -CGCGCCGaCUUa----GGCGCG-CUugCGCc -5'
23936 3' -57.4 NC_005262.1 + 51830 0.73 0.305944
Target:  5'- aGCGCGGCcGAcg-UGCGCGAagugcugaaGCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUuagGCGCGCU---------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 23535 0.73 0.301591
Target:  5'- aGCGCGGgaGGA-CCGCGCagacuGAccaaccgcccgccgcGCGCGGg -3'
miRNA:   3'- -CGCGCCgaCUUaGGCGCG-----CU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52835 0.74 0.277829
Target:  5'- -aGCGGCUGAAggCUGCGCucACGCa- -3'
miRNA:   3'- cgCGCCGACUUa-GGCGCGcuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 11394 0.72 0.335406
Target:  5'- cGCGCGGCUccacgccGAAgCCGCGCc-GCGcCGGg -3'
miRNA:   3'- -CGCGCCGA-------CUUaGGCGCGcuUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 54198 0.72 0.336188
Target:  5'- aGCGCGuGCUccagcgcCCGCGCGAGC-CGGa -3'
miRNA:   3'- -CGCGC-CGAcuua---GGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 51192 0.71 0.376128
Target:  5'- aCGCGGCggcccgcUGGAgCCGCGCGGGCGauGc -3'
miRNA:   3'- cGCGCCG-------ACUUaGGCGCGCUUGCgcC- -5'
23936 3' -57.4 NC_005262.1 + 35199 0.71 0.368556
Target:  5'- cGCGUGGCcagccuacGUCCGCaaGGAUGCGGa -3'
miRNA:   3'- -CGCGCCGacu-----UAGGCGcgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 48466 0.72 0.360267
Target:  5'- cGCGCGGaucgcGAG-CCGCGUGGGCaCGGg -3'
miRNA:   3'- -CGCGCCga---CUUaGGCGCGCUUGcGCC- -5'
23936 3' -57.4 NC_005262.1 + 10699 0.72 0.360267
Target:  5'- uGCGCaGaucGAggCCGCGCGcACGCGGc -3'
miRNA:   3'- -CGCGcCga-CUuaGGCGCGCuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 15143 0.72 0.352109
Target:  5'- uCGCGGCcggcgucGAGUCgGCGCGGAUGuUGGa -3'
miRNA:   3'- cGCGCCGa------CUUAGgCGCGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 34496 0.72 0.3513
Target:  5'- cGCGCGGCgg----CGCGCGAcuucugcgagacgACGCGGc -3'
miRNA:   3'- -CGCGCCGacuuagGCGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 5160 0.72 0.347277
Target:  5'- gGCGC-GCUGAucggugacggccggcGUCgcggGCGCGGGCGCGGc -3'
miRNA:   3'- -CGCGcCGACU---------------UAGg---CGCGCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4559 0.72 0.344082
Target:  5'- cGCGCGGCgc-AUCuCGCGCcAGCgGCGGc -3'
miRNA:   3'- -CGCGCCGacuUAG-GCGCGcUUG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.