Results 61 - 80 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 43750 | 0.71 | 0.402113 |
Target: 5'- uGCGCGuGCUGAccacgaaGUUCGggcucaGCGAGCGCGu -3' miRNA: 3'- -CGCGC-CGACU-------UAGGCg-----CGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 43693 | 0.69 | 0.487438 |
Target: 5'- cCG-GGCcGAAUUCGCGCGGcgACGCGc -3' miRNA: 3'- cGCgCCGaCUUAGGCGCGCU--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 35390 | 0.69 | 0.497343 |
Target: 5'- aCGCGGCgcucAAUaCCGCGCGcACGCu- -3' miRNA: 3'- cGCGCCGac--UUA-GGCGCGCuUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 44988 | 0.69 | 0.497343 |
Target: 5'- cGUGCaGC--AGUCCGCGCGGcagGCgGCGGa -3' miRNA: 3'- -CGCGcCGacUUAGGCGCGCU---UG-CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 57938 | 0.69 | 0.497343 |
Target: 5'- uCGCGGCauucaacgUGGAgg-GCGCGAGCGCGc -3' miRNA: 3'- cGCGCCG--------ACUUaggCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 24752 | 0.69 | 0.505331 |
Target: 5'- cGUGCGGCcGAAguggauucagcaCCGCgGCGAGC-CGGg -3' miRNA: 3'- -CGCGCCGaCUUa-----------GGCG-CGCUUGcGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 15632 | 0.69 | 0.517415 |
Target: 5'- gGCGCGGCUGAa--CGCGuCGGGCa--- -3' miRNA: 3'- -CGCGCCGACUuagGCGC-GCUUGcgcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 10789 | 0.68 | 0.527572 |
Target: 5'- cGCGCGGUacug-CUGCGCGAGCugccGCGa -3' miRNA: 3'- -CGCGCCGacuuaGGCGCGCUUG----CGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 38230 | 0.68 | 0.527572 |
Target: 5'- gGCGCagacGGCUGccGUCUGguUGgGAGCGCGGa -3' miRNA: 3'- -CGCG----CCGACu-UAGGC--GCgCUUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 15880 | 0.69 | 0.487438 |
Target: 5'- aCGCGauggcGCUGAuccgCCGCGUGcGCGCGa -3' miRNA: 3'- cGCGC-----CGACUua--GGCGCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 44140 | 0.7 | 0.467916 |
Target: 5'- cGCGUuccGGCcgGAcgCgCGCGCGAucgggcaggaGCGCGGc -3' miRNA: 3'- -CGCG---CCGa-CUuaG-GCGCGCU----------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 43858 | 0.71 | 0.411922 |
Target: 5'- uGCGcCGGCaGGAccUCgGCGCGAucGCGCGc -3' miRNA: 3'- -CGC-GCCGaCUU--AGgCGCGCU--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 45272 | 0.7 | 0.43013 |
Target: 5'- aGCGuCGaacGC-GAAcuUCCGCGCGAACGuCGGc -3' miRNA: 3'- -CGC-GC---CGaCUU--AGGCGCGCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 60851 | 0.7 | 0.43013 |
Target: 5'- gGCGUGGCgauggccgagGcAAUgCGCGCGAaaGCGCGa -3' miRNA: 3'- -CGCGCCGa---------C-UUAgGCGCGCU--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 1143 | 0.7 | 0.43941 |
Target: 5'- uGCG-GGCUucGAugcugCCGCGCGGgcuugccauccuGCGCGGa -3' miRNA: 3'- -CGCgCCGA--CUua---GGCGCGCU------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 22480 | 0.7 | 0.43941 |
Target: 5'- aGCGCGaagcGCUGAAgcuggCGCGCGAGCggaucgcgaaGCGGc -3' miRNA: 3'- -CGCGC----CGACUUag---GCGCGCUUG----------CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 23009 | 0.7 | 0.457351 |
Target: 5'- cGUGCGGCaUGAAugcggcuUCCGCGUGGaguucaucgACGCa- -3' miRNA: 3'- -CGCGCCG-ACUU-------AGGCGCGCU---------UGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 18160 | 0.7 | 0.458306 |
Target: 5'- aGCGCGuGCccgccUGA--UCGCGCGAGCGCc- -3' miRNA: 3'- -CGCGC-CG-----ACUuaGGCGCGCUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 56943 | 0.7 | 0.467916 |
Target: 5'- aGCGCacGCcG-AUCCGCGCGGGCgaguucGCGGg -3' miRNA: 3'- -CGCGc-CGaCuUAGGCGCGCUUG------CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 23397 | 1.12 | 0.000614 |
Target: 5'- cGCGCGGCUGAAUCCGCGCGAACGCGGc -3' miRNA: 3'- -CGCGCCGACUUAGGCGCGCUUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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