Results 81 - 100 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 46732 | 0.66 | 0.663813 |
Target: 5'- cGCGCcuaucGGCgccGUgCGCGCGAcgagcuCGCGGa -3' miRNA: 3'- -CGCG-----CCGacuUAgGCGCGCUu-----GCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 38546 | 0.66 | 0.663813 |
Target: 5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3' miRNA: 3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 4504 | 0.66 | 0.663813 |
Target: 5'- cGUcCGGCaUGuccucguuGAUCCGCGCG-ACGCGc -3' miRNA: 3'- -CGcGCCG-AC--------UUAGGCGCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 55759 | 0.67 | 0.642678 |
Target: 5'- aCGCGcGCUGcgucAGUCCuGaCGCGAGC-CGGa -3' miRNA: 3'- cGCGC-CGAC----UUAGG-C-GCGCUUGcGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 50422 | 0.67 | 0.642678 |
Target: 5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3' miRNA: 3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 32036 | 0.67 | 0.642678 |
Target: 5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3' miRNA: 3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 3733 | 0.67 | 0.642678 |
Target: 5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3' miRNA: 3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 58242 | 0.67 | 0.642678 |
Target: 5'- uGCGUGGUgacGAUCCGCGCaucGAGCaCGa -3' miRNA: 3'- -CGCGCCGac-UUAGGCGCG---CUUGcGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 4659 | 0.67 | 0.641619 |
Target: 5'- cGCGCGGC-GAcgCgGCcCGGccgguucgccucgGCGCGGu -3' miRNA: 3'- -CGCGCCGaCUuaGgCGcGCU-------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 23138 | 0.66 | 0.674344 |
Target: 5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3' miRNA: 3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 39601 | 0.66 | 0.674344 |
Target: 5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3' miRNA: 3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 29309 | 0.66 | 0.705676 |
Target: 5'- cGCGCGcCg----CCGCGCGGAUGUGc -3' miRNA: 3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 30893 | 0.66 | 0.699449 |
Target: 5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3' miRNA: 3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 56907 | 0.66 | 0.695285 |
Target: 5'- aCGCGGCUcGAAaaCGCGau--CGCGGc -3' miRNA: 3'- cGCGCCGA-CUUagGCGCgcuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 18790 | 0.66 | 0.695285 |
Target: 5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3' miRNA: 3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17186 | 0.66 | 0.684838 |
Target: 5'- cGCGUcgGGCgGGAUCUGUGgCGucUGCGGc -3' miRNA: 3'- -CGCG--CCGaCUUAGGCGC-GCuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 10214 | 0.66 | 0.684838 |
Target: 5'- uGCGCGGUacaUGcugccGGUCaGCGCGuGCGCGc -3' miRNA: 3'- -CGCGCCG---AC-----UUAGgCGCGCuUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 8646 | 0.66 | 0.675395 |
Target: 5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3' miRNA: 3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 51914 | 0.66 | 0.674344 |
Target: 5'- cCGCGGCcaccuUUCGCGCGAuacacgucgccgACaGCGGg -3' miRNA: 3'- cGCGCCGacuu-AGGCGCGCU------------UG-CGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 52968 | 0.66 | 0.674344 |
Target: 5'- aGCGCGGCgGA---CGCGCauGCGCuGGu -3' miRNA: 3'- -CGCGCCGaCUuagGCGCGcuUGCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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