Results 21 - 40 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 3' | -57.4 | NC_005262.1 | + | 12223 | 0.67 | 0.638444 |
Target: 5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3' miRNA: 3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 3733 | 0.67 | 0.642678 |
Target: 5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3' miRNA: 3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 39601 | 0.66 | 0.674344 |
Target: 5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3' miRNA: 3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 56907 | 0.66 | 0.695285 |
Target: 5'- aCGCGGCUcGAAaaCGCGau--CGCGGc -3' miRNA: 3'- cGCGCCGA-CUUagGCGCgcuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 24878 | 0.68 | 0.568873 |
Target: 5'- aGCGCcauc-GAUCUGCGCGAGCGCa- -3' miRNA: 3'- -CGCGccgacUUAGGCGCGCUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 46185 | 0.67 | 0.600371 |
Target: 5'- cGCGCuGCUGGcgcuccagcUCCGCGCGcuGCGCc- -3' miRNA: 3'- -CGCGcCGACUu--------AGGCGCGCu-UGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 50422 | 0.67 | 0.642678 |
Target: 5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3' miRNA: 3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 30893 | 0.66 | 0.699449 |
Target: 5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3' miRNA: 3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 10457 | 0.67 | 0.61093 |
Target: 5'- cGCGCGGUcggcGAGguagCgGCGC--GCGCGGu -3' miRNA: 3'- -CGCGCCGa---CUUa---GgCGCGcuUGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 29309 | 0.66 | 0.705676 |
Target: 5'- cGCGCGcCg----CCGCGCGGAUGUGc -3' miRNA: 3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 32036 | 0.67 | 0.642678 |
Target: 5'- aUGCGGCggauguugUGGA-CCGUGCGcuuGCGCGa -3' miRNA: 3'- cGCGCCG--------ACUUaGGCGCGCu--UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 47132 | 0.67 | 0.631034 |
Target: 5'- gGCuGCGGCcacuUGAacuugucGUCCGCGUGcuCGCGc -3' miRNA: 3'- -CG-CGCCG----ACU-------UAGGCGCGCuuGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 38546 | 0.66 | 0.663813 |
Target: 5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3' miRNA: 3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 23138 | 0.66 | 0.674344 |
Target: 5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3' miRNA: 3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 8646 | 0.66 | 0.675395 |
Target: 5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3' miRNA: 3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 18790 | 0.66 | 0.695285 |
Target: 5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3' miRNA: 3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 17109 | 0.68 | 0.5481 |
Target: 5'- cGCGCGGCgcUGA--CUGCaucgGCGGGCGuCGGu -3' miRNA: 3'- -CGCGCCG--ACUuaGGCG----CGCUUGC-GCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 13343 | 0.68 | 0.56783 |
Target: 5'- cGUGCGGCcGuccUCCucGCGCGGcacgacgacgugcACGCGGc -3' miRNA: 3'- -CGCGCCGaCuu-AGG--CGCGCU-------------UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 51613 | 0.68 | 0.579334 |
Target: 5'- uGCGCGauuuGCUccugCCGCGCaGAcaGCGCGGc -3' miRNA: 3'- -CGCGC----CGAcuuaGGCGCG-CU--UGCGCC- -5' |
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23936 | 3' | -57.4 | NC_005262.1 | + | 36255 | 0.67 | 0.600371 |
Target: 5'- cCGgGGCUGAgcucgcccucGUCgGUGC--GCGCGGg -3' miRNA: 3'- cGCgCCGACU----------UAGgCGCGcuUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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