miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 28409 0.68 0.568873
Target:  5'- cGCGCGGUauUGAGcgCCGCGU--GCGCc- -3'
miRNA:   3'- -CGCGCCG--ACUUa-GGCGCGcuUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 50422 0.67 0.642678
Target:  5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3'
miRNA:   3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 30893 0.66 0.699449
Target:  5'- cGCGCGuGC-GAcgCCGC-CGGcuuggccgacguucgACGCGGc -3'
miRNA:   3'- -CGCGC-CGaCUuaGGCGcGCU---------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 15109 0.68 0.579334
Target:  5'- gGCGCGGC---GUCCG-GCugGAACGCGc -3'
miRNA:   3'- -CGCGCCGacuUAGGCgCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 29309 0.66 0.705676
Target:  5'- cGCGCGcCg----CCGCGCGGAUGUGc -3'
miRNA:   3'- -CGCGCcGacuuaGGCGCGCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 40484 0.7 0.420967
Target:  5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3'
miRNA:   3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 18790 0.66 0.695285
Target:  5'- cCGCGuGUUGGcGUCCGcCGCcugccGCGCGGa -3'
miRNA:   3'- cGCGC-CGACU-UAGGC-GCGcu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 1378 0.7 0.445974
Target:  5'- cCGCGGUUGcguuacauaaccacAAUCCGCggGCGGGCGCu- -3'
miRNA:   3'- cGCGCCGAC--------------UUAGGCG--CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 15766 0.69 0.473731
Target:  5'- gGCGCGGCcGGcugCUGCGUGGucuggguguugguCGCGGg -3'
miRNA:   3'- -CGCGCCGaCUua-GGCGCGCUu------------GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 33132 0.69 0.507336
Target:  5'- aGCGUccGCUGucgauGUCCGCGUuguccGACGCGGg -3'
miRNA:   3'- -CGCGc-CGACu----UAGGCGCGc----UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 3844 0.68 0.537802
Target:  5'- aGCG-GGC-GAAUCUGCuucGCGAGCGCc- -3'
miRNA:   3'- -CGCgCCGaCUUAGGCG---CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 17109 0.68 0.5481
Target:  5'- cGCGCGGCgcUGA--CUGCaucgGCGGGCGuCGGu -3'
miRNA:   3'- -CGCGCCG--ACUuaGGCG----CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 13343 0.68 0.56783
Target:  5'- cGUGCGGCcGuccUCCucGCGCGGcacgacgacgugcACGCGGc -3'
miRNA:   3'- -CGCGCCGaCuu-AGG--CGCGCU-------------UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17778 0.67 0.589836
Target:  5'- aGCGCGGCagcgcGAcgCCuuGCGCgugcagGAACGCGa -3'
miRNA:   3'- -CGCGCCGa----CUuaGG--CGCG------CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 10457 0.67 0.61093
Target:  5'- cGCGCGGUcggcGAGguagCgGCGC--GCGCGGu -3'
miRNA:   3'- -CGCGCCGa---CUUa---GgCGCGcuUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 12223 0.67 0.638444
Target:  5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3'
miRNA:   3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 3733 0.67 0.642678
Target:  5'- cGCGCGGCg----UUGCGCaggauGAACGcCGGg -3'
miRNA:   3'- -CGCGCCGacuuaGGCGCG-----CUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 38546 0.66 0.663813
Target:  5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3'
miRNA:   3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 23138 0.66 0.674344
Target:  5'- uGCGCGugggucgggucGCUGAcgCCGUGCc--CGUGGc -3'
miRNA:   3'- -CGCGC-----------CGACUuaGGCGCGcuuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8646 0.66 0.675395
Target:  5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3'
miRNA:   3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.