miRNA display CGI


Results 61 - 80 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 3' -57.4 NC_005262.1 + 44711 0.68 0.5481
Target:  5'- gGCGUGGCUGcaucAGUUCaaG-GAGCGCGGc -3'
miRNA:   3'- -CGCGCCGAC----UUAGGcgCgCUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 19656 0.68 0.537802
Target:  5'- cGCGCGcGC---GUCCG-GCcgGAACGCGGg -3'
miRNA:   3'- -CGCGC-CGacuUAGGCgCG--CUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 8646 0.66 0.675395
Target:  5'- uCGCGGCcggguagagcucgagGAAUUCGCGUGcgaacuGCGCGa -3'
miRNA:   3'- cGCGCCGa--------------CUUAGGCGCGCu-----UGCGCc -5'
23936 3' -57.4 NC_005262.1 + 39601 0.66 0.674344
Target:  5'- uCGCGGCUG---CCGCcuCGGGCGUGa -3'
miRNA:   3'- cGCGCCGACuuaGGCGc-GCUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 38546 0.66 0.663813
Target:  5'- -gGCGGCgcagGAG-CCG-GCGuugcGCGCGGu -3'
miRNA:   3'- cgCGCCGa---CUUaGGCgCGCu---UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 50422 0.67 0.642678
Target:  5'- cGCGCccaGGCgcagGAuUCCGUGCuGGCGCa- -3'
miRNA:   3'- -CGCG---CCGa---CUuAGGCGCGcUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 12223 0.67 0.638444
Target:  5'- uGgGCGGCgcgcucaagcUCCGCGCGcgaccACGUGGu -3'
miRNA:   3'- -CgCGCCGacuu------AGGCGCGCu----UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 4897 0.67 0.621507
Target:  5'- cGC-CGGcCUGA--UCGCGC-AGCGCGGc -3'
miRNA:   3'- -CGcGCC-GACUuaGGCGCGcUUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 17778 0.67 0.589836
Target:  5'- aGCGCGGCagcgcGAcgCCuuGCGCgugcagGAACGCGa -3'
miRNA:   3'- -CGCGCCGa----CUuaGG--CGCG------CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 15109 0.68 0.579334
Target:  5'- gGCGCGGC---GUCCG-GCugGAACGCGc -3'
miRNA:   3'- -CGCGCCGacuUAGGCgCG--CUUGCGCc -5'
23936 3' -57.4 NC_005262.1 + 4786 0.74 0.258122
Target:  5'- cCGCGGCUugcaGAcgGUCgaaGCGCGAcgGCGCGGg -3'
miRNA:   3'- cGCGCCGA----CU--UAGg--CGCGCU--UGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 63722 0.73 0.284659
Target:  5'- gGCGCGGCcGAcuUCUuCGCGAGcCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUu-AGGcGCGCUU-GCGCC- -5'
23936 3' -57.4 NC_005262.1 + 5591 0.69 0.517415
Target:  5'- cGgGCGGCgccgcucUCCGCagGCGA-CGCGGa -3'
miRNA:   3'- -CgCGCCGacuu---AGGCG--CGCUuGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 31369 0.69 0.477628
Target:  5'- uGC-CGGCgaUGAAaCCGgcaGCGAugGCGGg -3'
miRNA:   3'- -CGcGCCG--ACUUaGGCg--CGCUugCGCC- -5'
23936 3' -57.4 NC_005262.1 + 1378 0.7 0.445974
Target:  5'- cCGCGGUUGcguuacauaaccacAAUCCGCggGCGGGCGCu- -3'
miRNA:   3'- cGCGCCGAC--------------UUAGGCG--CGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 40484 0.7 0.420967
Target:  5'- uGCGCGGCgccuuGAUgCGCuugaugGCGAACGaCGGg -3'
miRNA:   3'- -CGCGCCGac---UUAgGCG------CGCUUGC-GCC- -5'
23936 3' -57.4 NC_005262.1 + 40243 0.71 0.402113
Target:  5'- cGCGCGGCgGGcgguuggucaGUCUGCGCGGuccucccGCGCu- -3'
miRNA:   3'- -CGCGCCGaCU----------UAGGCGCGCU-------UGCGcc -5'
23936 3' -57.4 NC_005262.1 + 53013 0.72 0.360267
Target:  5'- cGCGCaGCaGua-CCGCGCGcccGGCGCGGg -3'
miRNA:   3'- -CGCGcCGaCuuaGGCGCGC---UUGCGCC- -5'
23936 3' -57.4 NC_005262.1 + 52400 0.72 0.320799
Target:  5'- gGCGCGGCUucggcgugGAGcCgCGCGCGAACGUc- -3'
miRNA:   3'- -CGCGCCGA--------CUUaG-GCGCGCUUGCGcc -5'
23936 3' -57.4 NC_005262.1 + 62610 0.73 0.305215
Target:  5'- cGCGCGGC-GAAcucgcacugggcuUCCGCGCaGGauggcaagcccGCGCGGc -3'
miRNA:   3'- -CGCGCCGaCUU-------------AGGCGCG-CU-----------UGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.