miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 9342 0.66 0.878766
Target:  5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3'
miRNA:   3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 24323 0.66 0.878766
Target:  5'- -gCGAUgGUCGgCG-CGAUCGACAUg- -3'
miRNA:   3'- caGCUG-CAGCgGCuGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 12574 0.66 0.878766
Target:  5'- cGUCGAgcugcugcUGcCGCCGGCGA--GGCGUCGc -3'
miRNA:   3'- -CAGCU--------GCaGCGGCUGCUagCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30481 0.66 0.878766
Target:  5'- aUCGACGgCGCCGAa-AUCcuGCGUCAg -3'
miRNA:   3'- cAGCUGCaGCGGCUgcUAGc-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33338 0.66 0.878766
Target:  5'- cGUCGcugcGCGgcaccgUGCCGcCGAUCGACAa-- -3'
miRNA:   3'- -CAGC----UGCa-----GCGGCuGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 29770 0.66 0.878766
Target:  5'- aUCGACGcggCGCaCGAUGcggccCGGCGUCAc -3'
miRNA:   3'- cAGCUGCa--GCG-GCUGCua---GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 20092 0.66 0.878766
Target:  5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3'
miRNA:   3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 40536 0.66 0.878766
Target:  5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3'
miRNA:   3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 41677 0.66 0.878766
Target:  5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3'
miRNA:   3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 54116 0.66 0.874185
Target:  5'- cUCGACGUCGaCGGCGcccUCGccuacucgcucgagcACAUCAa -3'
miRNA:   3'- cAGCUGCAGCgGCUGCu--AGC---------------UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 44768 0.66 0.871083
Target:  5'- uUCGACaUCGCCaGCGcgCGGCAg-- -3'
miRNA:   3'- cAGCUGcAGCGGcUGCuaGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 24778 0.66 0.871083
Target:  5'- -gCGGCGa-GCCgGGCGAgcacuUCGACAUCGc -3'
miRNA:   3'- caGCUGCagCGG-CUGCU-----AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 32313 0.66 0.871083
Target:  5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3'
miRNA:   3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 17320 0.66 0.871083
Target:  5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3'
miRNA:   3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 18043 0.66 0.871083
Target:  5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3'
miRNA:   3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 51122 0.66 0.871083
Target:  5'- cUCGACG-CGCCGGuCGAcaaggcgcUCGACGcCGu -3'
miRNA:   3'- cAGCUGCaGCGGCU-GCU--------AGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 30900 0.66 0.863157
Target:  5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3'
miRNA:   3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 30022 0.66 0.863157
Target:  5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3'
miRNA:   3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 29146 0.66 0.863157
Target:  5'- aUCGACGagGCCGagugGCGcgCGACcaugcGUCAg -3'
miRNA:   3'- cAGCUGCagCGGC----UGCuaGCUG-----UAGU- -5'
23936 5' -53.6 NC_005262.1 + 56522 0.66 0.863157
Target:  5'- --gGACG-CGCCGugGuuccCGGCAUCc -3'
miRNA:   3'- cagCUGCaGCGGCugCua--GCUGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.