Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 16363 | 0.68 | 0.752182 |
Target: 5'- aUCGGCGcCGCCG-CGuUCGGCAa-- -3' miRNA: 3'- cAGCUGCaGCGGCuGCuAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 62735 | 0.68 | 0.782249 |
Target: 5'- aUCGGCG-CGCUGGCGGUCagcGCcgCAg -3' miRNA: 3'- cAGCUGCaGCGGCUGCUAGc--UGuaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 7533 | 0.68 | 0.782249 |
Target: 5'- uUCGGCGgcgCGUCGGCGcgcucgaCGACAUCc -3' miRNA: 3'- cAGCUGCa--GCGGCUGCua-----GCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 34649 | 0.68 | 0.762338 |
Target: 5'- -cCGGCGUCGCuCGACuGGcUCGACGa-- -3' miRNA: 3'- caGCUGCAGCG-GCUG-CU-AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51672 | 0.68 | 0.762338 |
Target: 5'- -cCGACuacaagcaGCCGGCGAUCGACAc-- -3' miRNA: 3'- caGCUGcag-----CGGCUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 46795 | 0.68 | 0.741907 |
Target: 5'- -aCGGCGgcgaGCCGAUGAcCGACGUgCAg -3' miRNA: 3'- caGCUGCag--CGGCUGCUaGCUGUA-GU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 967 | 0.69 | 0.678367 |
Target: 5'- cGUCGAgcCGUgGCCGAUcGUCGGCAcgUCGc -3' miRNA: 3'- -CAGCU--GCAgCGGCUGcUAGCUGU--AGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 57476 | 0.69 | 0.731523 |
Target: 5'- -gCGGCGggCGCCGACGAgaggCGGCcggCGa -3' miRNA: 3'- caGCUGCa-GCGGCUGCUa---GCUGua-GU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30622 | 0.69 | 0.689127 |
Target: 5'- aUCGAgcCGcCGCCGACGcUCGGCAa-- -3' miRNA: 3'- cAGCU--GCaGCGGCUGCuAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 39476 | 0.69 | 0.699833 |
Target: 5'- uGUCGAuCG-CGCCGACcAUCGcgagaaGCAUCAg -3' miRNA: 3'- -CAGCU-GCaGCGGCUGcUAGC------UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 55925 | 0.69 | 0.721042 |
Target: 5'- cGUCGAC--CGuCCGGCGAUCGAgggcggcggcCGUCAg -3' miRNA: 3'- -CAGCUGcaGC-GGCUGCUAGCU----------GUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 56158 | 0.69 | 0.689127 |
Target: 5'- -cCGuCGcCGCCGGCG-UCGACAUUc -3' miRNA: 3'- caGCuGCaGCGGCUGCuAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 47567 | 0.69 | 0.689127 |
Target: 5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3' miRNA: 3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 33873 | 0.69 | 0.678367 |
Target: 5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3' miRNA: 3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29182 | 0.69 | 0.710475 |
Target: 5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3' miRNA: 3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 7642 | 0.69 | 0.678367 |
Target: 5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3' miRNA: 3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 36027 | 0.69 | 0.710475 |
Target: 5'- -aUGACGUUGuaGACGGUCGGCGc-- -3' miRNA: 3'- caGCUGCAGCggCUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 28234 | 0.69 | 0.731523 |
Target: 5'- uUCG-CGcucuuucccgCGCCGGCGAgCGACAUCGc -3' miRNA: 3'- cAGCuGCa---------GCGGCUGCUaGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 50830 | 0.69 | 0.731523 |
Target: 5'- gGUCGuCGaCGCCGAgcCGGUCGGCGa-- -3' miRNA: 3'- -CAGCuGCaGCGGCU--GCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 42922 | 0.7 | 0.667565 |
Target: 5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3' miRNA: 3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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