Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 23433 | 1.09 | 0.002091 |
Target: 5'- cGUCGACGUCGCCGACGAUCGACAUCAg -3' miRNA: 3'- -CAGCUGCAGCGGCUGCUAGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 15870 | 0.88 | 0.060722 |
Target: 5'- uUCGAUGUCGCCGGCGcUCGGCGUCu -3' miRNA: 3'- cAGCUGCAGCGGCUGCuAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30974 | 0.77 | 0.29376 |
Target: 5'- -cCGACGUCGCCGGacaUGAggcCGACGUCGa -3' miRNA: 3'- caGCUGCAGCGGCU---GCUa--GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 11693 | 0.77 | 0.28657 |
Target: 5'- -aCGGCGUCGCCGA-GGUCGucCGUCAu -3' miRNA: 3'- caGCUGCAGCGGCUgCUAGCu-GUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 11755 | 0.75 | 0.382091 |
Target: 5'- cUCGAUGUaggCGCCGGCGAUCGuCAUg- -3' miRNA: 3'- cAGCUGCA---GCGGCUGCUAGCuGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 45877 | 0.75 | 0.39095 |
Target: 5'- cGUUGGCGUCGgCGcCGAUCGGCGgcUCGc -3' miRNA: 3'- -CAGCUGCAGCgGCuGCUAGCUGU--AGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 31579 | 0.75 | 0.364779 |
Target: 5'- cUCGAaucCGaCGCCGGCGAUCG-CAUCAc -3' miRNA: 3'- cAGCU---GCaGCGGCUGCUAGCuGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 62823 | 0.75 | 0.382091 |
Target: 5'- -gCGACGU-GCCGACGAUCGGCc--- -3' miRNA: 3'- caGCUGCAgCGGCUGCUAGCUGuagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 54558 | 0.74 | 0.424866 |
Target: 5'- -gCGACGUCGCCGcguucgcgagcgagGCGcugaacgagaagAUCGACGUCAg -3' miRNA: 3'- caGCUGCAGCGGC--------------UGC------------UAGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 4439 | 0.74 | 0.418315 |
Target: 5'- cUCGGCGUUGCCGGCguacuuugcgauGAUCGcguucGCAUCAg -3' miRNA: 3'- cAGCUGCAGCGGCUG------------CUAGC-----UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 12956 | 0.74 | 0.446814 |
Target: 5'- -gCGACGgcaUCGCCGAcCGcUCGGCGUCGa -3' miRNA: 3'- caGCUGC---AGCGGCU-GCuAGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 6555 | 0.74 | 0.437193 |
Target: 5'- uUCGGCGUguugcCGCCGACGAgCGGCGcgaUCAg -3' miRNA: 3'- cAGCUGCA-----GCGGCUGCUaGCUGU---AGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 52446 | 0.74 | 0.446814 |
Target: 5'- cGUCGACGU-GCCGcgcGCGAgCGGCGUCu -3' miRNA: 3'- -CAGCUGCAgCGGC---UGCUaGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 22701 | 0.73 | 0.456551 |
Target: 5'- cUCGACGUgGCCGGCGGcgUUGACGa-- -3' miRNA: 3'- cAGCUGCAgCGGCUGCU--AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51523 | 0.73 | 0.476361 |
Target: 5'- cUCGGC-UCGCCGgccGCGAUCGACAg-- -3' miRNA: 3'- cAGCUGcAGCGGC---UGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 37872 | 0.73 | 0.457532 |
Target: 5'- aGUCGGCGUCGCgcguggCGACGuaccaugcgcgcugcUCGGCAUCGa -3' miRNA: 3'- -CAGCUGCAGCG------GCUGCu--------------AGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 13419 | 0.72 | 0.527624 |
Target: 5'- uUCG-CGUCGCC-ACGGUCGACGa-- -3' miRNA: 3'- cAGCuGCAGCGGcUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 15970 | 0.72 | 0.517193 |
Target: 5'- gGUCGACc-UGCUGGCGAUCGACGagaUCGg -3' miRNA: 3'- -CAGCUGcaGCGGCUGCUAGCUGU---AGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 19582 | 0.72 | 0.563627 |
Target: 5'- aGUCGGCcgagaugauguauucGUCGCCuucggugcgaguGGCGGUCGGCGUCc -3' miRNA: 3'- -CAGCUG---------------CAGCGG------------CUGCUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 40364 | 0.72 | 0.559354 |
Target: 5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3' miRNA: 3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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